View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14733_high_8 (Length: 327)

Name: NF14733_high_8
Description: NF14733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14733_high_8
NF14733_high_8
[»] chr2 (1 HSPs)
chr2 (15-307)||(20068317-20068609)


Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 20068609 - 20068317
Alignment:
Q  15 atatgacgtttttacgaacattaacaccaattctaactgcctaagggtcaatttcatagcctatagattttccaccaccagtttgccaataattagagtt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20068609 atatgacgtttttacgaacattaacaccaattctaactgcctaagggtcactttcatagcctatagattttccaccaccagtttgccaataattagagtt 20068510  T
Q  115 ccataaacatattgtaaatgtgatactacttcatcttacctccccaccttgaagcctttaaagtaactcatatttaccgttttcttcattaaaccaccta 214  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20068509 ccataaacatattgtaaaagtgatactacttcatcttacctccccaccttgaagcctttaaagtaactcatatttaccgttttcttcattaaaccaccta 20068410  T
Q  215 cctcctccgccactaaaagtataagaaacggagccaaattgtcctcttgctttaagccccctgttaatgtatatttgtcattgtttaaatgtg 307  Q
     | ||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20068409 acccctccgccactaaaagtataagaaacggagccaaatgatgctcttgctttaagccccctgttaatgtatatttgtcattgtttaaatgtg 20068317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University