View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14733_low_12 (Length: 261)
Name: NF14733_low_12
Description: NF14733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14733_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 44966662 - 44966423
Alignment:
| Q |
12 |
tcatcaattagttcctctgaaagagattccacatcacttagtttctccctcaattcctcattttctattctctgtaacacaatcaagttatagttaatca |
111 |
Q |
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| T |
44966662 |
tcatcaattagttcctctgaaagagattccacatcacttagtttctccctcaattcctcattttctattctctgtaacacaatcaagttatagttaatca |
44966563 |
T |
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| Q |
112 |
gttttgcatttctcataatttgagaattaagagtgtacatacaaattcatcattgaaattgtaagttccgtccaatagtctcttgctaattgggaaatat |
211 |
Q |
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| T |
44966562 |
gttttgcatttctcataatttgagaattaagagtgtacatacaaattcatcattgaaattgtaagttccgtccaatagtctcctgctaattgggaaatat |
44966463 |
T |
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| Q |
212 |
gtccctaaaattgtaaaatgtcattcaaaatgattcctat |
251 |
Q |
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| T |
44966462 |
gtccctaaaattataaaatgtcattcaaaatgattcctat |
44966423 |
T |
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Back To:
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 32244915 - 32244871
Alignment:
| Q |
199 |
aattgggaaatatgtccctaaaattgtaaaatgtcattcaaaatg |
243 |
Q |
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| T |
32244915 |
aattggcaaatatatctccaaaattgtaaaatgtcattcaaaatg |
32244871 |
T |
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