View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14733_low_5 (Length: 387)
Name: NF14733_low_5
Description: NF14733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14733_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 16150508 - 16150756
Alignment:
| Q |
1 |
attgcttcttgttcattgctactcaactcaactactccactttctgaaaaaccacatggttcattgtttggaagattgttcaaatcaatcaaatttgtga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16150508 |
attgcttcttgttcattgctactcaactcaactactccactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtga |
16150607 |
T |
|
| Q |
101 |
ttctcaacctacataaataaattgaaagcaggaaggtttaaaatgtggagtagagttgcaaagcaattgaaagaacaactaataacaaatgtatcaacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
16150608 |
ttctcaacctacataaataaattgaaagcaggaaggtttaaaatgtggagtagagttgcaaagcaattgaaagaacaactaataacaaatgtattaatat |
16150707 |
T |
|
| Q |
201 |
gaaagaacaactgataacaaatgtaataacatgaaaaagcaagtaagaa |
249 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16150708 |
gaaagaacaactgataacaaatgtaataacatgaaaaaacaagtaagaa |
16150756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 3669834 - 3669901
Alignment:
| Q |
53 |
cacatggttcattgtttggaagatt-gttcaaatcaatcaaatttgtgattctcaacctacataaata |
119 |
Q |
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||||||||||||| ||| ||||||| ||||||||||| |||||||||| ||||||| |||| ||||| |
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| T |
3669834 |
cacatggttcattatttagaagatttgttcaaatcaaataaatttgtgactctcaacttacacaaata |
3669901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 23301803 - 23301555
Alignment:
| Q |
1 |
attgcttcttgttcattgctactcaactcaactactccactttctgaaaaaccacatggttcattgtttggaagattgttcaaatcaatcaaatttgtga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23301803 |
attgcttcttgttcattgctactcaactcaactactccactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtga |
23301704 |
T |
|
| Q |
101 |
ttctcaacctacataaataaattgaaagcaggaaggtttaaaatgtggagtagagttgcaaagcaattgaaagaacaactaataacaaatgtatcaacat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23301703 |
ttctcaacctacataaataaattgaaagcaggaaggtttaaaatgtggagtaaagttgcaaagcaattgaaagaacaactaataacaaatgtattaacat |
23301604 |
T |
|
| Q |
201 |
gaaagaacaactgataacaaatgtaataacatgaaaaagcaagtaagaa |
249 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
23301603 |
gaaagaacaactaataacaaatgtaataacatgaaaaaacaagtaagaa |
23301555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 26926167 - 26926066
Alignment:
| Q |
22 |
ctcaactcaactactccactttctgaaaaaccacatggttcattgtttggaagattgttcaaatcaatcaaatttgtgattctcaacctacataaataaa |
121 |
Q |
| |
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||||| |||| |||| || |||||||| | ||||||||| ||| ||||||| ||||||||||||||| |||| ||||| || |||||||| ||||||| |
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| T |
26926167 |
ctcaaatcaattacttcattttctgaattatcacatggtttattatttggaacattgttcaaatcaattaaatctgtgactcctaacctacacaaataaa |
26926068 |
T |
|
| Q |
122 |
tt |
123 |
Q |
| |
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|| |
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|
| T |
26926067 |
tt |
26926066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 7162432 - 7162500
Alignment:
| Q |
53 |
cacatggttcattgtttggaaga-ttgttcaaatcaatcaaatttgtgattctcaacctacataaataa |
120 |
Q |
| |
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||||||||||||| ||| ||||| || |||||||||| |||||||||| ||||||| |||| |||||| |
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| T |
7162432 |
cacatggttcattattttgaagatttcttcaaatcaaataaatttgtgactctcaacttacacaaataa |
7162500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 8925430 - 8925677
Alignment:
| Q |
1 |
attgcttcttgttcattgctactcaactcaactactccactttctgaaaaaccacatggttcattgtttggaagattgttcaaatcaatcaaatttgtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8925430 |
attgcttcttgttcattgctactcaactcaactacttcactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtga |
8925529 |
T |
|
| Q |
101 |
ttctcaacctacataaataaattgaaagcaggaaggtttaaaatgtggagtagagttgcaaagcaattgaaagaacaactaataacaaatgtatcaacat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8925530 |
ttctcaacctacataaataaattgaaagcaggaaggtttaaaatatggagtaaagttgcaaagcaattgaaagaacaactaataacaaatgtattaacat |
8925629 |
T |
|
| Q |
201 |
gaaagaacaactgataacaaatgtaataacatgaaaaagcaagtaagaa |
249 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
8925630 |
gaaagaacaactgataacaaatgtattaacatgaaaaa-caagtaagaa |
8925677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 8935687 - 8935934
Alignment:
| Q |
1 |
attgcttcttgttcattgctactcaactcaactactccactttctgaaaaaccacatggttcattgtttggaagattgttcaaatcaatcaaatttgtga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8935687 |
attgcttcttgttcattgctactcaactcaactacttcactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtga |
8935786 |
T |
|
| Q |
101 |
ttctcaacctacataaataaattgaaagcaggaaggtttaaaatgtggagtagagttgcaaagcaattgaaagaacaactaataacaaatgtatcaacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8935787 |
ttctcaacctacataaataaattgaaagcaggaaggtttaaaatatggagtaaagttgcaaagcaattgaaagaacaactaataacaaatgtattaacat |
8935886 |
T |
|
| Q |
201 |
gaaagaacaactgataacaaatgtaataacatgaaaaagcaagtaagaa |
249 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
8935887 |
gaaagaacaactgataacaaatgtattaacatgaaaaa-caagtaagaa |
8935934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 4653100 - 4653238
Alignment:
| Q |
1 |
attgcttcttgttcattgctactcaactcaactactccactttctgaaaaaccacatggttcattgtttggaagattgttcaaatcaatcaaatttgtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
4653100 |
attgcttcttgttcattgctactcaactcaactactccactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttatga |
4653199 |
T |
|
| Q |
101 |
ttctcaacctacataaataaattgaaagcaggaaggttt |
139 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
4653200 |
ttctcaacctacataaataaattgaaagcaggaaggttt |
4653238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 247 - 387
Target Start/End: Original strand, 6769738 - 6769877
Alignment:
| Q |
247 |
gaaaaaattagggccccctacggccggccctgtttactggcatgttttttaagtaatgccgatatatctttcttgttcttactcatctttcatatgttat |
346 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6769738 |
gaaaaaattagggcccc-tacagccggccctgtttactggcatgctttttaagtaatgccgatatatctttcttgttcttacttatctttcatatgttat |
6769836 |
T |
|
| Q |
347 |
caacaacttcactctatataattaatagttatttattctct |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6769837 |
caacaacttcactctatataattaatagttatttattctct |
6769877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 1000607 - 1000677
Alignment:
| Q |
53 |
cacatggttcattgtttggaagattgttcaaatcaatcaaatttgtgattctcaacctacataaataaatt |
123 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| |
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|
| T |
1000607 |
cacatggtttattatttggaagattgttcaaatcaattaaatttgtgactctcaacctacacaaataaatt |
1000677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 3067378 - 3067323
Alignment:
| Q |
334 |
tttcatatgttatcaacaacttcactctata--taattaatagttatttattctct |
387 |
Q |
| |
|
||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||| |
|
|
| T |
3067378 |
tttcacatgttatcaacaacttgactatataaataattaatagttatttattctct |
3067323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 1000533 - 1000580
Alignment:
| Q |
51 |
accacatggttcattgtttggaagattgttcaaatcaatcaaatttgt |
98 |
Q |
| |
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|||||||| || ||| ||||||||||||||||||||||| |||||||| |
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| T |
1000533 |
accacatgatttattatttggaagattgttcaaatcaattaaatttgt |
1000580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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