View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14733_low_7 (Length: 359)
Name: NF14733_low_7
Description: NF14733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14733_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 22284167 - 22283827
Alignment:
| Q |
18 |
taatacacgactaatatata--cctattttcactcaatactcataagtagtgtaaaataaaaaattagagaaagttaactaccaacttgttaacttgctg |
115 |
Q |
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| T |
22284167 |
taatacacgactaatatatatacctattttcactcacaactcataagtagtgtaaaataaaaaattagagaaagttaactaccaacttgttaacttgctg |
22284068 |
T |
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| Q |
116 |
cacataaaaaggaatatagatgcttcataaatggtcatagatgtaccataggactaaga--agca--ttca----catagaatttaagtgccaaataaat |
207 |
Q |
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| T |
22284067 |
cacataagaaggaatatagatgcttcataaatggtcatagatgtaccataggattaacacaatcaacttgaagtacacagaatttaagtgccaaataaat |
22283968 |
T |
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| Q |
208 |
aataactttcttaggctagcttt-aaggtgcacaagtacgatagatgctgtataatgtacaagtctgttttcaccattggatcaagtgatatatgacaag |
306 |
Q |
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| T |
22283967 |
aataactttcttaggctagcttttaaggtgcacaagtacaataggtgctgtataatgtacaagtttgttttcaccattggatcaagtgatatatgacaag |
22283868 |
T |
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| Q |
307 |
atttattgatccaataatagaaaacaaacttgtgtatggtg |
347 |
Q |
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| T |
22283867 |
atttattgatccaataatagaaaataaacttgtctatggtg |
22283827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 51626368 - 51626312
Alignment:
| Q |
265 |
acaagtctgttttcaccattggatcaagtgatatatgacaagatttattgatccaat |
321 |
Q |
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| T |
51626368 |
acaagtttgtttccaccattggatcaagcgagatatgacgagacttatggatccaat |
51626312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 356
Target Start/End: Complemental strand, 12240611 - 12240533
Alignment:
| Q |
278 |
caccattggatcaagtgatatatgacaagatttattgatccaataatagaaaacaaacttgtgtatggtgcaatgttat |
356 |
Q |
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| T |
12240611 |
caccattggatcaagtgagatacgatgggatttaatgatccaatagtggaaaacaaacttgggcatggtacaatattat |
12240533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 1940445 - 1940509
Alignment:
| Q |
286 |
gatcaagtgatatatgacaagatttattgatccaataatagaaaacaaacttgtgtatggtgcaa |
350 |
Q |
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| T |
1940445 |
gatcaagtgagatatggtgagacttattgatccaatgatgaaaaacaaacttgtgtatagtgcaa |
1940509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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