View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14733_low_9 (Length: 316)
Name: NF14733_low_9
Description: NF14733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14733_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 47 - 303
Target Start/End: Original strand, 16791472 - 16791728
Alignment:
| Q |
47 |
aattctgcctcaacttggcaattcaaacaagcttgaaagcattgaatcgttcgcaacactaaattcactggtctttcaggtgctttgaagtgttcaatgt |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16791472 |
aattctgcctcaacttggcaattcaaacaagcttgaaagcattgaatcgttcgcaacactaaattcaccggtctttcaggtgctttgaagtgttcaatgt |
16791571 |
T |
|
| Q |
147 |
tcattaatttctccctgtatgtataacttgtatggcgatttaaccagatgcattattagagaggattatggatggttgagtcgctatcagttggatggtt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16791572 |
tcattaatttctccctgtatgtataacttgtatggcgatttaaccagatgcattattagagaggattatggatggttgagtcgctatcagttggatggtt |
16791671 |
T |
|
| Q |
247 |
gagcagtattatttctccctgtatttttatcagtcttggttacagatttttcctttg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16791672 |
gagcagtattatttctccctgtatttttatcagtcttggttacagatttttcctttg |
16791728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 17097106 - 17097221
Alignment:
| Q |
117 |
gtctttcaggtgctttgaagtgttcaatgttcattaatttctccctgtatgtataacttgtatggcgatttaaccagatgcattattagagaggattatg |
216 |
Q |
| |
|
||||||||| | ||| ||||||||||||| ||||||||||||| ||||||| ||| ||||| | | |||||||||||||||| |||||||||| |||| |
|
|
| T |
17097106 |
gtctttcagatacttcgaagtgttcaatgctcattaatttctctctgtatgcatattttgtacgctggtttaaccagatgcattgttagagaggagtatg |
17097205 |
T |
|
| Q |
217 |
gatggttgagtcgcta |
232 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
17097206 |
gctggttgagtcgcta |
17097221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16791403 - 16791449
Alignment:
| Q |
1 |
ttgctttacaagtacgtatagacgtaaatgtaaacccctttttggaa |
47 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16791403 |
ttgctttagaagtacgtatagacgtaaatgtaaacccctttttggaa |
16791449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University