View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14734_high_2 (Length: 451)
Name: NF14734_high_2
Description: NF14734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14734_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 78 - 446
Target Start/End: Complemental strand, 9421777 - 9421406
Alignment:
| Q |
78 |
gttgaaatgaaaatgatatcataaccgttatagttatgtaatgtaaacatactttacacatgagattaaaatactctactaggaccgtatataacggata |
177 |
Q |
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| T |
9421777 |
gttgaaatgaaaatgaaatcataaccgttatagttatgtaatgtaaacatactttacacatgagattaaaatactctactaggaccgtatgtaacggata |
9421678 |
T |
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| Q |
178 |
aataataggtattatggttattaattggtggtaatgattttgtttagtgggggg---agataaataaatgggtaagttttaatttttgttgtttttggac |
274 |
Q |
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| T |
9421677 |
aataataggtattatggttattaattggtggtaatgattttgtttagtgggggggggagataaataaatgggtaagttttaatttttgttgtttttggag |
9421578 |
T |
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| Q |
275 |
aaatcattggagctccgccgccacgaatgcatgacgaaatcttggaaaagtatgctcctataaagtttttgttgcacgcgctatcatgctttgttcttaa |
374 |
Q |
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| T |
9421577 |
aaatcattggagctccgccgccacgaatgcatgacgaaatcttggaaaagtatgctcctataaagtttttgttgcacgcgctatcatgctttgctcttaa |
9421478 |
T |
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| Q |
375 |
atgttcacttgataactttactatatagaagactcttcatatactgtatnnnnnnnttagaagactcttcat |
446 |
Q |
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| T |
9421477 |
atgttcacttgataactttactatatagaagactcttcatatactgtataaaaaaattagaagactcttcat |
9421406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9421854 - 9421807
Alignment:
| Q |
1 |
gtggtgaggtgagtaagtaagaggttggttgaggggaatatatatagg |
48 |
Q |
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| T |
9421854 |
gtggtgaggtgagtaagtaagaggttggttgaggggaatatatatagg |
9421807 |
T |
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