View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14734_high_6 (Length: 369)
Name: NF14734_high_6
Description: NF14734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14734_high_6 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 1034334 - 1033994
Alignment:
| Q |
18 |
agcagagaagctagtatggataaaaaatgctactataagcaacaaaattcttaattaagtgaacaaatttgcaaggagaaaaaacttattaaatatggag |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034334 |
agcagtgaagctagtatggataaaaaatgctactataagcaacaaaattcttaattaagtgaacaaatttgcaaggagaaaaaacttattaaatatggag |
1034235 |
T |
|
| Q |
118 |
gttccacttccaaccttggatgctacaatacaacattgttttcttcattcaagaaagggatagtctgtataacctacaaccggatcagaagtgtagaatg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1034234 |
gttccacttccaaccttggatgctacaatacaacattgttttcttcattcaagaaagggatagtccgtataacctacaaccggatcagaagtgtagaatg |
1034135 |
T |
|
| Q |
218 |
tctccctgttatatttattgagaggagcgtttagtgcaaatctcttcggcaaatctggattcgctaagaacaaacgaccataaacaacaagatctgccct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034134 |
tctccctgttatatttattgagaggagcgtttagtgcaaatctcttcggcaaatctggattcgctaagaacaaacgaccataaacaacaagatctgccct |
1034035 |
T |
|
| Q |
318 |
attatctgctatagcattgatcccatcttgtctgtcataac |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034034 |
attatctgctatagcattgatcccatcttgtctgtcataac |
1033994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 126 - 356
Target Start/End: Complemental strand, 1044613 - 1044383
Alignment:
| Q |
126 |
tccaaccttggatgctacaatacaacattgttttcttcattcaagaaagggatagtctgtataacctacaaccggatcagaagtgtagaatgtctccctg |
225 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||| |
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| T |
1044613 |
tccacccttggatgctgcaatacaacattgttttcttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctcccta |
1044514 |
T |
|
| Q |
226 |
ttatatttattgagaggagcgtttagtgcaaatctcttcggcaaatctggattcgctaagaacaaacgaccataaacaacaagatctgccctattatctg |
325 |
Q |
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| T |
1044513 |
ttatacttgttgagaggagcattaagtgcaaatctctttggcaaatctggatttgctaagaacaaacgaccataaactacaagatctgccttgttttcag |
1044414 |
T |
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| Q |
326 |
ctatagcattgatcccatcttgtctgtcata |
356 |
Q |
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||||||||| |||||| |||||||||||||| |
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| T |
1044413 |
ctatagcatcgatcccgtcttgtctgtcata |
1044383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 146 - 344
Target Start/End: Complemental strand, 1059116 - 1058918
Alignment:
| Q |
146 |
tacaacattgttttcttcattcaagaaagggatagtctgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagc |
245 |
Q |
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||||||| || ||||||||||||||||| || ||||| |||||||||| ||| ||||| ||||||||||||||| |||||||||| || || |||||||| |
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| T |
1059116 |
tacaacactggtttcttcattcaagaaaagggtagtcagtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagc |
1059017 |
T |
|
| Q |
246 |
gtttagtgcaaatctcttcggcaaatctggattcgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcattgatcccatc |
344 |
Q |
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| T |
1059016 |
attaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatcccatc |
1058918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 157 - 358
Target Start/End: Complemental strand, 1066197 - 1065996
Alignment:
| Q |
157 |
tttcttcattcaagaaagggatagtctgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaa |
256 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||||| ||| ||||||||| ||||||| ||||||||||||||||| || |||||||| | ||||||| |
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| T |
1066197 |
tttcttcattcaagaaaggggtagtcagtataacctagaactggatcagaaatgtagaacgtctccctgttatatttgttcagaggagcatcaagtgcaa |
1066098 |
T |
|
| Q |
257 |
atctcttcggcaaatctggattcgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcattgatcccatcttgtctgtcata |
356 |
Q |
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| T |
1066097 |
atctctttggtaaatctggattagctaagaacaaacgaccatatacaacaaggtctgccctgttttcagctatggcattgatcccatcatgtcggtcgta |
1065998 |
T |
|
| Q |
357 |
ac |
358 |
Q |
| |
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|| |
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| T |
1065997 |
ac |
1065996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 164 - 356
Target Start/End: Complemental strand, 1053833 - 1053641
Alignment:
| Q |
164 |
attcaagaaagggatagtctgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaaatctctt |
263 |
Q |
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|||||||| | || ||||| |||||||||| ||| |||||||||||||||||||||||||| ||||| || || |||||||| || |||||||||||||| |
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| T |
1053833 |
attcaagagaagggtagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagcattaagtgcaaatctctt |
1053734 |
T |
|
| Q |
264 |
cggcaaatctggattcgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcattgatcccatcttgtctgtcata |
356 |
Q |
| |
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|| ||||||||||| | || |||||||||||||||| ||| ||||||||||||||| || |||||||||||||| ||||||||||| ||||| |
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| T |
1053733 |
tggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcagctatagcattgattccatcttgtctttcata |
1053641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 160 - 358
Target Start/End: Complemental strand, 1071921 - 1071723
Alignment:
| Q |
160 |
cttcattcaagaaagggatagtctgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaaatc |
259 |
Q |
| |
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|||||||||||||| || ||||| |||||||||| ||| ||||||||| ||| ||||||||||||||||| || || |||||||| | |||||||||| |
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| T |
1071921 |
cttcattcaagaaaagggtagtcagtataacctagaactggatcagaaacgtaaaatgtctccctgttatacttgtttagaggagcatcaagtgcaaatc |
1071822 |
T |
|
| Q |
260 |
tcttcggcaaatctggattcgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcattgatcccatcttgtctgtcataac |
358 |
Q |
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|||| |||||||||||||| |||||||||||||||||||| ||||| || |||||||| || || ||||| |||||||||||||| |||| ||| |||| |
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| T |
1071821 |
tctttggcaaatctggattagctaagaacaaacgaccatatacaactaggtctgccctgttttcagctatggcattgatcccatcatgtcggtcgtaac |
1071723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 137 - 356
Target Start/End: Complemental strand, 1047189 - 1046969
Alignment:
| Q |
137 |
atgctacaa-tacaacattgttttcttcattcaagaaagggatagtctgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttat |
235 |
Q |
| |
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||||||||| |||||||| ||| ||||||||||||| || ||||| |||||||| | ||| |||||||||||| ||||||||||| | ||||| || | |
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| T |
1047189 |
atgctacaagtacaacatatgtttattcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgt |
1047090 |
T |
|
| Q |
236 |
tgagaggagcgtttagtgcaaatctcttcggcaaatctggattcgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcatt |
335 |
Q |
| |
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| || ||||| || |||||||||||||| |||||||||||||| |||| ||| ||||| | ||| ||||||||||| ||||||| || ||||||||||| |
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| T |
1047089 |
ttaggggagcattaagtgcaaatctctttggcaaatctggattagctatgaataaacggtcgtaagcaacaagatctaccctattttcagctatagcatt |
1046990 |
T |
|
| Q |
336 |
gatcccatcttgtctgtcata |
356 |
Q |
| |
|
|||||| ||| |||| ||||| |
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| T |
1046989 |
gatcccgtctagtctttcata |
1046969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 167 - 349
Target Start/End: Original strand, 1640371 - 1640553
Alignment:
| Q |
167 |
caagaaagggatagtctgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaaatctcttcgg |
266 |
Q |
| |
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||||||| || |||||||||||||| | |||||||||||| ||||||||||| |||| |||||| || ||||||||||| | || || |||||||| || |
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| T |
1640371 |
caagaaaagggtagtctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttgg |
1640470 |
T |
|
| Q |
267 |
caaatctggattcgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcattgatcccatcttgtc |
349 |
Q |
| |
|
||||||||||| | || ||||| ||||||||| |||||||||||| | |||| || |||| |||| ||||||||||||| |
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|
| T |
1640471 |
taaatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtc |
1640553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 252 - 335
Target Start/End: Complemental strand, 65937 - 65854
Alignment:
| Q |
252 |
tgcaaatctcttcggcaaatctggattcgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcatt |
335 |
Q |
| |
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|||||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
65937 |
tgcaaatctctttggcaaatttggattagctaagaacgaacgaccataaacaacaagatctgccttattttctgctatagcatt |
65854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 252 - 320
Target Start/End: Original strand, 12121338 - 12121406
Alignment:
| Q |
252 |
tgcaaatctcttcggcaaatctggattcgctaagaacaaacgaccataaacaacaagatctgccctatt |
320 |
Q |
| |
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|||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
12121338 |
tgcaaatctcattggcaaatctggattagctaagaacaaacgaccataaacaacaagatctgccttatt |
12121406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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