View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14734_low_11 (Length: 307)
Name: NF14734_low_11
Description: NF14734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14734_low_11 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 3067055 - 3067343
Alignment:
| Q |
19 |
ataacagaataattgcttcaaggttgaaggagaagaacttcaccatctctaagctattgatctccaaatgttgtcaacatgatttaaattagtaccattt |
118 |
Q |
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| T |
3067055 |
ataacagaataattgcttcaaggttgaaggagaagaacttcaccatctctaagctattgatctccaaatgttgtcaacatgatttaaattagtaccattt |
3067154 |
T |
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| Q |
119 |
ggggtaagcgaagcacaacttgatcactcaatgtgcttgaagaaagtgaagcaaatatacaatgataaaatttgatccatatgcactaaaattagcattt |
218 |
Q |
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| T |
3067155 |
ggggtaagcgaagcacaacttgatcactcaatgtgcttgaagaaagtgaagcaaatatacaatgataaaatttgatccatatgcactaaaattagcattt |
3067254 |
T |
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| Q |
219 |
ggatttacttgcacagtatgatgtaaaagattcaattttcattttgaagttggcatctgnnnnnnnttagagaataaataactattaat |
307 |
Q |
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| T |
3067255 |
ggatttacttgcacagtatgatgtaaaagattcaattttcattttgaagttggcatctgaaaaaaattagagaataaataactattaat |
3067343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 23 - 272
Target Start/End: Original strand, 3069262 - 3069517
Alignment:
| Q |
23 |
cagaataattgcttcaaggttgaaggagaagaacttcaccatctctaagctattgatctccaaatgttgtcaa-------catgatttaaattagtacca |
115 |
Q |
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| T |
3069262 |
cagactaattgcttcaaagttgaaggagaagaaattcacaatttctaagctattgatctccaaatgttgtcaacattcaacatgatttaaattagtacca |
3069361 |
T |
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| Q |
116 |
tttggggtaagcgaagcacaacttgatcactcaatgtgcttgaagaaagtgaagcaaatatacaatgataaaatttgatccatatgcactaaaattagca |
215 |
Q |
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| T |
3069362 |
tttggggtaagtgaagcacaacttgatcactcaatgtaattgaagaaagtgaagcagatgcacaataataaaatttgattcatatggactaaaattagca |
3069461 |
T |
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| Q |
216 |
tttggatttacttgcacagtatgatgtaaaagattcaattttcattttgaagttggc |
272 |
Q |
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| T |
3069462 |
tttggatttacttgcacag-atgatgtaaaagattcaattttcattttgaaattggc |
3069517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 266
Target Start/End: Original strand, 3047699 - 3047909
Alignment:
| Q |
59 |
caccatctctaagctattgatctccaaatgttgtcaacatgatttaaattag--taccatttggggtaagcgaagcacaacttga--tcactcaatgtgc |
154 |
Q |
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| T |
3047699 |
caccatttctaagctattgatcttcacatgctgtcaacatgatttaaattagtataccattt-ggataactgaagaaaaacttgaccacactcaatgtga |
3047797 |
T |
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| Q |
155 |
ttgaagaaagtgaagcaaatatacaatgataaaatttg-atccatatgcactaaaattagcatttggatttacttgcacagtatgatgtaaaagattcaa |
253 |
Q |
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| T |
3047798 |
ttgaagaaagtgaatcgcgggcacgataataacatttgcatcc-taagtactaaaatttccaattggatttacatgtacaatatgatgtaaaagtttcag |
3047896 |
T |
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| Q |
254 |
ttttcattttgaa |
266 |
Q |
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| T |
3047897 |
ttttcattttgaa |
3047909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 32304853 - 32304911
Alignment:
| Q |
112 |
accatttggggtaagcgaagcacaacttgatcactcaatgtgcttgaagaaagtgaagc |
170 |
Q |
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| T |
32304853 |
accatttgtggtaagtgaagcacaacttgaccactcaagatgattgaagaaattgaagc |
32304911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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