View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14734_low_13 (Length: 251)
Name: NF14734_low_13
Description: NF14734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14734_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 8111571 - 8111788
Alignment:
| Q |
17 |
ctattttgattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgataaagaaatattaaatgaatttgaaacnnnnnnnnngttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
8111571 |
ctattttgattggttgttgtaaaata----gatgagtcataatcaattttgattggatgataaagaaacattaaatgaatttgaaactttttttttgttg |
8111666 |
T |
|
| Q |
117 |
taaaaattatatannnnnnnatgcaaacatttgttgtatatagtgtgcggcagctgctcatctcttttaacatcctcttcaact-nnnnnnnntgaagct |
215 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
8111667 |
taaaaattatacttttttttatgcaaacat---ttgtatatagtgtgcggcagctgctcatctcttttaacattcccttcaactaaaaaaaaatgaagct |
8111763 |
T |
|
| Q |
216 |
gcttagtactgttgttttgatgatg |
240 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
8111764 |
gcttagtactgttgttttgatgatg |
8111788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 8106925 - 8107143
Alignment:
| Q |
17 |
ctattttgattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgataaagaaatattaaatgaatttgaaac-nnnnnnnnngtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
8106925 |
ctattttgattggttgttgtaaaata----gatgagtcataatcaattttgattggatgataaagaaacattaaatgaatttgaaacttttttttttgtt |
8107020 |
T |
|
| Q |
116 |
gtaaaaattatatannnnnnnatgcaaacatttgttgtatatagtgtgcggcagctgctcatctcttttaacatcctcttcaact-nnnnnnnntgaagc |
214 |
Q |
| |
|
|||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| |
|
|
| T |
8107021 |
gtaaaaattatacatttttttatgcaaacat---ttgtatatagtgtgcggcagctgctcatctcttttaacattcccttcaactaaaaaaaaatgaagc |
8107117 |
T |
|
| Q |
215 |
tgcttagtactgttgttttgatgatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8107118 |
tgcttagtactgttgttttgatgatg |
8107143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 772619 - 772690
Alignment:
| Q |
20 |
ttttgattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgataaagaaatattaaatgaa |
95 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||||| |||||||||| |
|
|
| T |
772619 |
ttttgattggttgttgaaaaata----gatgagtcataattcattttgattgaatgataaagaaacattaaatgaa |
772690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 25113457 - 25113515
Alignment:
| Q |
36 |
taaaatatatagatgagtcataatcaattttgattggatgataaagaaatattaaatga |
94 |
Q |
| |
|
||||||||||| |||||||||||| ||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
25113457 |
taaaatatataagtgagtcataatctattttaattggatgataaaaaaacattaaatga |
25113515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 10894588 - 10894546
Alignment:
| Q |
52 |
gtcataatcaattttgattggatgataaagaaatattaaatga |
94 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
10894588 |
gtcataatcaattttgattggatgataagaaaacattaaatga |
10894546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 38050247 - 38050289
Alignment:
| Q |
52 |
gtcataatcaattttgattggatgataaagaaatattaaatga |
94 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
38050247 |
gtcataatccattttgattggatgataagaaaatattaaatga |
38050289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 30890105 - 30890182
Alignment:
| Q |
20 |
ttttgattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgat-aaagaaatattaaatgaatttga |
100 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||||| ||| |||||||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
30890105 |
tttttattggttgttgaaaaatatat----gagtcatgatctattttgattggatgataaaaaaaacattaaatgaatttga |
30890182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 501141 - 501099
Alignment:
| Q |
52 |
gtcataatcaattttgattggatgataaagaaatattaaatga |
94 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
501141 |
gtcataatcaattttgattggatgataagaaagtattaaatga |
501099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University