View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14734_low_15 (Length: 218)
Name: NF14734_low_15
Description: NF14734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14734_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 11539984 - 11539771
Alignment:
| Q |
1 |
tagaagataaatcacctacctatgatttctatctacctgtagaatcccaaaagaccttcggttttggcgattctcctaactgatccagacagtcctgtgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11539984 |
tagaagataaatcacctacctatgatttctatctacctgtagaatcccaaaagaccttcggttttggcgattctcctaactgatccagacattcctgtgc |
11539885 |
T |
|
| Q |
101 |
tatgaaactcagttcttcgggtctgtaaagaatgattgtgattaatcaatctactgtcaattggtcgtttagtttaagaaaagccattcactaattacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11539884 |
tatgaaactcagttcttcgggtctgtaaagaatgattgtgattaatcaatctacggtcaattggtcgtttagtttaagaaaagccattcactaattacat |
11539785 |
T |
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| Q |
201 |
gcaacgaaatttca |
214 |
Q |
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|||||||||||||| |
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| T |
11539784 |
gcaacgaaatttca |
11539771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 34755676 - 34755463
Alignment:
| Q |
1 |
tagaagataaatcacctacctatgatttctatctacctgtagaatcccaaaagaccttcggttttggcgattctcctaactgatccagacagtcctgtgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34755676 |
tagaagataaatcacctacctatgatttctatctacctgtagaatcccaaaagaccttcggttttggcgattctcctaactgatccagacattcctgtgc |
34755577 |
T |
|
| Q |
101 |
tatgaaactcagttcttcgggtctgtaaagaatgattgtgattaatcaatctactgtcaattggtcgtttagtttaagaaaagccattcactaattacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34755576 |
tatgaaactcagttcttcgggtctgtaaagaatgattgtgattaatcaatctacggtcaattggtcgtttagtttaagaaaagccattcactaattacac |
34755477 |
T |
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| Q |
201 |
gcaacgaaatttca |
214 |
Q |
| |
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|||||||||||||| |
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| T |
34755476 |
gcaacgaaatttca |
34755463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 4 - 196
Target Start/End: Complemental strand, 34599074 - 34598880
Alignment:
| Q |
4 |
aagataaatcacctacctatgatttctatcta--cctgtagaatcccaaaagaccttcggttttggcgattctcctaactgatccagacagtcctgtgct |
101 |
Q |
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||||||||||||||||||||||||||||| || ||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
34599074 |
aagataaatcacctacctatgatttctatatatacctgtagaaccccaaaaggccttcggttttggcaattctcctaactgatccagacagtcctgcgct |
34598975 |
T |
|
| Q |
102 |
atgaaactcagttcttcgggtctgtaaagaatgattgtgattaatcaatctactgtcaattggtcgtttagtttaagaaaagccattcactaatt |
196 |
Q |
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| T |
34598974 |
acgaaactcagttcttcgggtctgcaaaatatgattgtgattaatcaatctatggtcaattggtcgcttagtttaagaaaagccattcactaatt |
34598880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 34755095 - 34755031
Alignment:
| Q |
150 |
tctactgtcaattggtcgtttagtttaagaaaagccattcactaattacatgcaacgaaatttca |
214 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34755095 |
tctacggtcaattggtcgtttagtttaagaaaagccattcactaattacacgcaacgaaatttca |
34755031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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