View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14734_low_2 (Length: 458)

Name: NF14734_low_2
Description: NF14734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14734_low_2
NF14734_low_2
[»] chr5 (4 HSPs)
chr5 (1-362)||(32267793-32268158)
chr5 (1-401)||(41888925-41889332)
chr5 (6-426)||(41900887-41901311)
chr5 (392-433)||(32268161-32268202)
[»] chr3 (2 HSPs)
chr3 (170-393)||(51763831-51764054)
chr3 (53-273)||(514230-514454)
[»] chr4 (5 HSPs)
chr4 (131-271)||(547368-547508)
chr4 (142-354)||(21833808-21834020)
chr4 (200-327)||(3438101-3438228)
chr4 (50-87)||(53761480-53761517)
chr4 (50-82)||(10634134-10634166)
[»] chr1 (1 HSPs)
chr1 (151-285)||(17352116-17352250)
[»] chr8 (2 HSPs)
chr8 (268-414)||(27922680-27922823)
chr8 (141-268)||(17627566-17627693)
[»] chr6 (5 HSPs)
chr6 (14-76)||(10579461-10579523)
chr6 (97-162)||(6596562-6596627)
chr6 (50-82)||(6602905-6602937)
chr6 (50-82)||(7119506-7119538)
chr6 (50-82)||(7131984-7132016)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 32267793 - 32268158
Alignment:
Q  1 ccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagttctta----gtacaaagaa 96  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    | ||||||||    
T  32267793 ccatcaaagatttagaactctctagactctttttcccaatacatgtgtgttccattttgatctcactaagtgaagggcagttcttaaggagaacaaagaa 32267892  T
Q  97 ggctgattctgtgagcattgaacaatgagtcaaatttatagattccaaatcaacaagaaacgaagacatctccacaacatgttcatcattcagaaaaaca 196  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  32267893 ggctgattctgtaagcattgaacaatgagtcaaatttatagattccaaatcaacaagaaacgaagacatctccacaacatgatcatctttcagaaaaaca 32267992  T
Q  197 acattttgaagatccaagtgttggaaatgttgacacttggatagaaaagaaaagattccagaatagctatagccggtgcaatcttgaagaacacgcctcg 296  Q
     ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||    
T  32267993 gcattttgaagatccaagtgttggaaatgttgacacttggatagtaaagaaaggattccagaatagctatagccggtgcaatcttggagaacaagcctcg 32268092  T
Q  297 tcataggaagaccttcaaatgaaatataggagagcaactcatctgagatattcaaagataacaaat 362  Q
    ||| |||||||| ||   ||| |||| |||||||||||||||||||||||||||||||||||||||    
T  32268093 tcaaaggaagacattggtatgcaatagaggagagcaactcatctgagatattcaaagataacaaat 32268158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 41889332 - 41888925
Alignment:
Q  1 ccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagttctta----gtacaaagaa 96  Q
    |||| ||||||||||| |||| |||||||| ||| | ||||||  ||||||||||||||||  ||| ||||||||| || ||||||    || |||||||    
T  41889332 ccatcaaagatttagagctctttagactctattttccaatacacgtgtgttccattttgataacacaaagtgaaggacaattcttaagaagtgcaaagaa 41889233  T
Q  97 ggctgattctgtgagcattgaacaatgagtcaaatttatagattccaaatcaacaagaaacgaagacatctccacaacatgttcatcattcagaaaaaca 196  Q
     |||||||||||||| || ||||||||| |||| ||||||||| |||||||| ||||||| ||||||| |||||||||||||| || |||||||||||||    
T  41889232 tgctgattctgtgagtatcgaacaatgattcaagtttatagataccaaatcaccaagaaatgaagacaactccacaacatgtttatgattcagaaaaaca 41889133  T
Q  197 acattttgaagatccaagtgttggaaatgttgacacttggatagaaaagaaaagattccagaatagctatagccggtgcaatctt----gaagaacacgc 292  Q
    | |||||||||||||||  |||||| ||||| |||||||||||| ||| |||||||||||| ||| ||| |||||||||||| ||    | ||||| | |    
T  41889132 atattttgaagatccaaaagttggatatgttcacacttggatagtaaacaaaagattccagcataactaaagccggtgcaattttgtagggagaac-cac 41889034  T
Q  293 ctcgtcataggaagaccttcaaatgaaatataggagagcaactcatctgagatattcaaagataacaaatgaagagaagtcaagtacttcaaactcacca 392  Q
    || |||| | ||| |||||  | || |||| |||| |||| |||||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  41889033 ctagtcaaaagaaaaccttgcattgcaatagaggaaagcatctcatcggagatattcaaagaaaacaaatcaagacaagtcaagtacttcaaactcacca 41888934  T
Q  393 aagaggaaa 401  Q
    || ||||||    
T  41888933 aacaggaaa 41888925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 6 - 426
Target Start/End: Complemental strand, 41901311 - 41900887
Alignment:
Q  6 aaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagttctt----agtacaaagaaggctg 101  Q
    |||||| |||||||||||||||||| ||||| ||||| | ||| |||||| ||||| |||| ||||||||| || ||| |    ||||||||||||||||    
T  41901311 aaagatctagaactctctagactctctttcccaatacctgtgtcttccatattgatatcaccaagtgaaggacaattcctaagaagtacaaagaaggctg 41901212  T
Q  102 attctgtgagcattgaacaatgagtcaaatttatagattccaaatcaacaagaaacgaagacatctccacaacatgttcatcattcagaaaaacaacatt 201  Q
    || | |||| ||| |  |||  || ||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||| || ||||||||| ||||    
T  41901211 ataccgtgaccatcgggcaactagccaagtttatagataccaaatcaccaagaaacgaagacatctccacaacatgttcatctttgagaaaaacagcatt 41901112  T
Q  202 ttgaagatccaagtgttggaaatgttgacacttggatagaaaagaaaagattccagaatagctatagccggtgcaatcttgaagaacacgcctcgtcata 301  Q
    || ||||||||| ||||  ||||||||||||||||| || ||| |||  ||||||||||| ||||| |||||||||| ||| |||||| |||| |||| |    
T  41901111 ttcaagatccaaatgttttaaatgttgacacttggacagtaaacaaataattccagaataactataaccggtgcaattttggagaacaagcctagtcaaa 41901012  T
Q  302 ggaagaccttcaaatgaaatataggagagcaactcatctgagatattcaaagataacaaatgaagagaagtcaagtacttcaaactcaccaaagaggaaa 401  Q
    || |||||||  | || |||| ||  ||| ||| |||||||||||||  |||| || |||| ||||||||| || ||||| |||||| |||| | |||      
T  41901011 ggtagaccttggattgcaatagagatgagaaacacatctgagatattggaagacaataaatcaagagaagttaaatacttgaaactcgccaaggtggatc 41900912  T
Q  402 tgaattgtgaagtgatataagttga 426  Q
    |||| |||||||| || ||||||||    
T  41900911 tgaaatgtgaagtaatgtaagttga 41900887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 32268161 - 32268202
Alignment:
Q  392 aaagaggaaatgaattgtgaagtgatataagttgactggcgt 433  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  32268161 aaagaggagatgaattgtgaagtgatataagttgactggcgt 32268202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 170 - 393
Target Start/End: Complemental strand, 51764054 - 51763831
Alignment:
Q  170 acaacatgttcatcattcagaaaaacaacattttgaagatccaagtgttggaaatgttgacacttggatagaaaagaaaagattccagaatagctatagc 269  Q
    |||||||||  ||||||||||||| || ||| |||||||||||| ||||  ||| ||||||| |||||||  ||| ||| |||||||| ||| |||||||    
T  51764054 acaacatgtatatcattcagaaaaccagcatcttgaagatccaaatgtttcaaacgttgacagttggataccaaacaaatgattccagcataactatagc 51763955  T
Q  270 cggtgcaatcttgaagaacacgcctcgtcataggaagaccttcaaatgaaatataggagagcaactcatctgagatattcaaagataacaaatgaagaga 369  Q
    | ||||||  |||||| ||| ||||  ||| | ||||||||||   || |||  || ||||||||||||| ||||| ||||||     ||||| ||||||    
T  51763954 ccgtgcaaatttgaaggacaagccttttcaaaagaagaccttcccttgcaatcgagtagagcaactcatcagagattttcaaacgcttcaaatcaagaga 51763855  T
Q  370 agtcaagtacttcaaactcaccaa 393  Q
    ||||||   |||||||||||||||    
T  51763854 agtcaaacccttcaaactcaccaa 51763831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 273
Target Start/End: Complemental strand, 514454 - 514230
Alignment:
Q  53 cattttgatctcactaagtgaagggcagttctt----agtacaaagaaggctgattctgtgagcattgaacaatgagtcaaatttatagattccaaatca 148  Q
    |||||||||||||||||||||||| ||||||||    ||| |||| |||| | | | ||||||||||||||| |   |||| ||||||||   ||||| |    
T  514454 cattttgatctcactaagtgaaggacagttcttaacaagtgcaaacaaggataaatgtgtgagcattgaacatttgctcaagtttatagacaacaaatga 514355  T
Q  149 acaagaaacgaagacatctccacaacatgttcatcattcagaaaaacaacattttgaagatccaagtgttggaaatgttgacacttggatagaaaagaaa 248  Q
     |||||||| | ||||  ||||||||||||| |||||| || ||||   ||| |||||||| ||| ||||| |    || ||| |||||||  |||||||    
T  514354 ccaagaaacaatgacaaatccacaacatgttgatcattgaggaaaagggcatcttgaagattcaaatgttgtatccatttacatttggataacaaagaaa 514255  T
Q  249 agattccagaatagctatagccggt 273  Q
    ||||||||  |||||  ||||||||    
T  514254 agattccatcatagccgtagccggt 514230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 271
Target Start/End: Original strand, 547368 - 547508
Alignment:
Q  131 tttatagattccaaatcaacaagaaacgaagacatctccacaacatgttcatcattcagaaaaacaacattttgaagatccaagtgttggaaatgttgac 230  Q
    |||||| | ||||||||| |||||||| ||||||  || | |||||||| || | ||| ||||||| ||||||||||||| || ||||||| |||||| |    
T  547368 tttataaactccaaatcaccaagaaacaaagacaagtcaagaacatgttgattagtcaaaaaaacagcattttgaagatctaaatgttggatatgttggc 547467  T
Q  231 acttggatagaaaagaaaagattccagaatagctatagccg 271  Q
    ||||||| | |||| || | ||||||| ||| |||||||||    
T  547468 acttggacaaaaaacaagatattccagcataactatagccg 547508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 354
Target Start/End: Complemental strand, 21834020 - 21833808
Alignment:
Q  142 caaatcaacaagaaacgaagacatctccacaacatgttcatcattcagaaaaacaacattttgaagatccaagtgttggaaatgttgacacttggataga 241  Q
    ||||||| ||||||| ||| ||| ||  |||||||||| |||||||||||| |    || || ||||||||| ||||||| |   ||||  |||||||      
T  21834020 caaatcaccaagaaatgaatacaactggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataac 21833921  T
Q  242 aaagaaaagattccagaatagctatagccggtgcaatcttgaagaacacgcctcgtcataggaagaccttcaaatgaaatataggagagcaactcatctg 341  Q
    ||| |||||||||||  ||| |||||||||||||| | | |||| ||| ||||||| | ||||||||||||   || |||| || |||| ||||||||      
T  21833920 aaacaaaagattccatcataactatagccggtgcattttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatcca 21833821  T
Q  342 agatattcaaaga 354  Q
    |||||| ||||||    
T  21833820 agatatacaaaga 21833808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 327
Target Start/End: Complemental strand, 3438228 - 3438101
Alignment:
Q  200 ttttgaagatccaagtgttggaaatgttgacacttggatagaaaagaaaagattccagaatagctatagccggtgcaatcttgaagaacacgcctcgtca 299  Q
    |||||||||||||| ||||| | |  ||||||||||||||  | |||||||||| ||| ||| ||||||||||||||||  || || ||| ||||  |||    
T  3438228 ttttgaagatccaaatgttgtatacattgacacttggataacagagaaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctca 3438129  T
Q  300 taggaagaccttcaaatgaaatatagga 327  Q
     |||||||||| ||| || |||| ||||    
T  3438128 aaggaagacctccaattgcaatagagga 3438101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 53761517 - 53761480
Alignment:
Q  50 ttccattttgatctcactaagtgaagggcagttcttag 87  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  53761517 ttccattttgatctcactaagtgaaggacagtttttag 53761480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 10634166 - 10634134
Alignment:
Q  50 ttccattttgatctcactaagtgaagggcagtt 82  Q
    ||||||||||||||||||||||||||| |||||    
T  10634166 ttccattttgatctcactaagtgaaggacagtt 10634134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 285
Target Start/End: Original strand, 17352116 - 17352250
Alignment:
Q  151 aagaaacgaagacatctccacaacatgttcatcattcagaaaaacaacattttgaagatccaagtgttggaaatgttgacacttggatagaaaagaaaag 250  Q
    |||||| ||||||| |||||||| ||||| |||| |||||||| || || ||||||||||| | ||||||| | |||| ||||||||||  ||||||||     
T  17352116 aagaaatgaagacaactccacaaaatgttgatcactcagaaaaccagcagtttgaagatcctaatgttggatacgttggcacttggataacaaagaaaaa 17352215  T
Q  251 attccagaatagctatagccggtgcaatcttgaag 285  Q
     |||||| ||| || ||||| ||| ||| ||||||    
T  17352216 gttccagcataactgtagccagtggaatattgaag 17352250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 414
Target Start/End: Original strand, 27922680 - 27922823
Alignment:
Q  268 gccggtgcaatcttgaagaacacgcctcgtcataggaagaccttcaaatgaaatataggagagcaactcatctgagatattcaaagataacaaatgaaga 367  Q
    |||| |||||| ||| |||||| ||||||||| ||| |||| |||    | |||| |||||||||||||||| ||||||||| |||| || |||| ||||    
T  27922680 gccgatgcaatattggagaacaagcctcgtcaaaggtagacgttcggtggcaatagaggagagcaactcatccgagatattcgaagacaataaatcaaga 27922779  T
Q  368 gaagtcaagtacttcaaactcaccaaagaggaaatgaattgtgaagt 414  Q
    ||||  ||| | ||||||||   ||| ||||||||||| ||||||||    
T  27922780 gaagctaagcatttcaaact---caaggaggaaatgaaatgtgaagt 27922823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 268
Target Start/End: Complemental strand, 17627693 - 17627566
Alignment:
Q  141 ccaaatcaacaagaaacgaagacatctccacaacatgttcatcattcagaaaaacaacattttgaagatccaagtgttggaaatgttgacacttggatag 240  Q
    |||||| | ||||||| ||||||| ||| | || ||||| || ||||| ||||  | |||  ||||||||||| ||||||| |  ||||||| ||||||     
T  17627693 ccaaattaccaagaaatgaagacaactcaaaaatatgttgattattcaaaaaataagcatactgaagatccaaatgttggatacattgacacatggataa 17627594  T
Q  241 aaaagaaaagattccagaatagctatag 268  Q
     |||||||| ||||||||||| ||||||    
T  17627593 caaagaaaatattccagaataactatag 17627566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 10579523 - 10579461
Alignment:
Q  14 agaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagg 76  Q
    |||| |||||| ||||||| ||||||||  | ||| ||||||||||||||||||||| |||||    
T  10579523 agaattctctacactctttgtccaaatagctgtgttttccattttgatctcactaagcgaagg 10579461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 6596627 - 6596562
Alignment:
Q  97 ggctgattctgtgagcattgaacaatgagtcaaatttatagattccaaatcaacaagaaacgaaga 162  Q
    |||||||||||||||| ||||||||||| | |  ||||||||  |||||||| |||||||| ||||    
T  6596627 ggctgattctgtgagccttgaacaatgattaaggtttatagaaaccaaatcaccaagaaacaaaga 6596562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 6602937 - 6602905
Alignment:
Q  50 ttccattttgatctcactaagtgaagggcagtt 82  Q
    ||||||||||||||||||||||||||| |||||    
T  6602937 ttccattttgatctcactaagtgaaggacagtt 6602905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 7119506 - 7119538
Alignment:
Q  50 ttccattttgatctcactaagtgaagggcagtt 82  Q
    ||||||||||| |||||||||||||||||||||    
T  7119506 ttccattttgaactcactaagtgaagggcagtt 7119538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 7131984 - 7132016
Alignment:
Q  50 ttccattttgatctcactaagtgaagggcagtt 82  Q
    ||||||||||| |||||||||||||||||||||    
T  7131984 ttccattttgaactcactaagtgaagggcagtt 7132016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University