View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14734_low_4 (Length: 419)
Name: NF14734_low_4
Description: NF14734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14734_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Original strand, 1720401 - 1720793
Alignment:
| Q |
19 |
tttgggtcatctttgcactgttccttatctcaagtaatggtgcatatgagtacttgaagttagcccgaacatggccacccacattttgttcaactaaccc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1720401 |
tttgggtcatctttgcactgttccttatctcaagtaatggtgcatatgagtacttgaagttagcccgaacatggccacccacattttgttcaactaaccc |
1720500 |
T |
|
| Q |
119 |
ttgcaagcttggtaaaaatacagatactaaattttatattcatgggttgttgcccacaaaccattctaatcctcagcctaggcaggaatgccaccactag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1720501 |
ttgcaagcttggtaaaaatacagatactaaattttatattcatgggttg--gcccacaaaccattctaatcctcaacctaggcaggaatgccaccactag |
1720598 |
T |
|
| Q |
219 |
tacggaggtaagtatattaaaatatcttactttctcactattttaaccaccaccctaagaaaaaataatcttgtttaattttattttttaaaaacctttt |
318 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1720599 |
tacggcagtaagtatattaaaatatcttactttctcattattttaaccaccaccctaagaaaaaataatcttgtttaattttattttttaaaaacctttt |
1720698 |
T |
|
| Q |
319 |
cagaatggatttccaaggtatagttcacaatctaggcttgcagaaagtttatagttttaatggcttagtcattatatcagcaatttgatcctatg |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1720699 |
cagaatggatttccaaggtatagttcacaatctaggcttgcagaaagtttatagttttaatagcttagtcattatatcagcaatttgatcctatg |
1720793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University