View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14734_low_5 (Length: 406)
Name: NF14734_low_5
Description: NF14734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14734_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 2624410 - 2624020
Alignment:
| Q |
1 |
atgtgacggacaacttcgccatctgactaattctttacaatggaagaaacttcatgaattgcatatggattttgggactaagtcaagaaaccatatgctt |
100 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2624410 |
atgtgacggtcaacttcgtcatctgactaattctttacaatggaaaaaacttcatgaattgtatatggattttgggactaagtcaagaaaccatatgctt |
2624311 |
T |
|
| Q |
101 |
gaatttgctacatattgaataaatcgatatatgcaaatttaatagtaacatagttcatggcccattctcccaatatatgcaaatatattatgttatctat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2624310 |
gaatttgctacatattgaataaatcgatatatgcaaatttaatagtaacatagttcatggcccattctcccaatatatgcaaatacattatgttatctat |
2624211 |
T |
|
| Q |
201 |
gatgattttgggtctaagacaaccaagatacgacatatatgtttatctaagtccattgattgagaccatgagaatgaaatttctccaaaagactaaacta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2624210 |
gatgattttgggtctaagacaaccaagatacgacatatatgtttatctaagtccattgattgagaccatgagaatgaaatttctccaaaagactaaacta |
2624111 |
T |
|
| Q |
301 |
gagaacaagtttatgaatgctcgtacaataacaagactattttctctgaggactcgtgatatgtcagagaggaaaccaacac-gttgtctg |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2624110 |
gagaacaagtttatgaatgctcgtacaataacaagactattttctctgaggactcgtgatatgtcagagaggaaaccaacactgttgtctg |
2624020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 6186185 - 6186267
Alignment:
| Q |
181 |
aaatatattatgttatctatgatgattttgggtctaagacaaccaagatacgacatatatgtttatctaagtccattgattga |
263 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| | | |||||| | |||||||| ||||||||||||||||||||||||| |
|
|
| T |
6186185 |
aaatatattatgttatcgatgatgatttcgggcccatatcaaccaggtaacgacatagatgtttatctaagtccattgattga |
6186267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University