View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14734_low_7 (Length: 376)
Name: NF14734_low_7
Description: NF14734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14734_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 3067320 - 3067661
Alignment:
| Q |
19 |
attagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaacatcaaggatatatcaaatatcaatgtgccagaata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067320 |
attagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaacatcaaggatatatcaaatatcaatgtgccagaata |
3067419 |
T |
|
| Q |
119 |
taaacaaataataatacatgcagtcttccatacaagctagaatacattgtacttcaataaaaggctttagatgcgtataatcgttttgatgccaataagt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067420 |
taaacaaataataatacatgcagtcttccatacaagctataatacattgtacttcaataaaaggctttagatgcgtataatcgttttgatgccaataagt |
3067519 |
T |
|
| Q |
219 |
gccattcaaaatcttagagtagtacagatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067520 |
gccattcaaaatcttagagtagtacagatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcg |
3067619 |
T |
|
| Q |
319 |
tcaggatccaccagtgagtaactttttcgacaccgacatgtt |
360 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3067620 |
tcaggatccaccagtgagtaactttttcgacaccgacgtgtt |
3067661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 244 - 360
Target Start/End: Original strand, 3071184 - 3071300
Alignment:
| Q |
244 |
agatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaacttt |
343 |
Q |
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||||||||||||| |||| |||||||||||||| |||| ||||||| |||||||||||||||||| |||||| |||||||| | ||||||||||| || |
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| T |
3071184 |
agatcctttgttttactttgttcatcttctgcacatccttgtatgaaatctggcttgcagctaccatgtggatcatcaggatcaagcagtgagtaacgtt |
3071283 |
T |
|
| Q |
344 |
ttcgacaccgacatgtt |
360 |
Q |
| |
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|| |||||||||||||| |
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| T |
3071284 |
ttggacaccgacatgtt |
3071300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 258 - 360
Target Start/End: Complemental strand, 3055768 - 3055666
Alignment:
| Q |
258 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
357 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |||||| |||||||| ||||||||||| | |||| ||||| ||||| |
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| T |
3055768 |
acttagttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaagtggatcatcaggatcaaccagtgagtatcgttttggacactgacat |
3055669 |
T |
|
| Q |
358 |
gtt |
360 |
Q |
| |
|
||| |
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|
| T |
3055668 |
gtt |
3055666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 258 - 357
Target Start/End: Complemental strand, 3034906 - 3034807
Alignment:
| Q |
258 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
357 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||| ||||| | |||| ||||| ||||| |
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| T |
3034906 |
acttggttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaaatggatcttcaggatcaaccagcgagtatcgttttggacactgacat |
3034807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 244 - 354
Target Start/End: Complemental strand, 3040773 - 3040663
Alignment:
| Q |
244 |
agatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaacttt |
343 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||| |||| || |||||||||||||||||| | |||| ||||||||| || ||||||||||| | |
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|
| T |
3040773 |
agatcctttgttttacatagttcatcttctgcacatccttgtacgaaatctggcttgcagctaccataaggatagtcaggatcaactagtgagtaactat |
3040674 |
T |
|
| Q |
344 |
ttcgacaccga |
354 |
Q |
| |
|
| |||||||| |
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|
| T |
3040673 |
ctggacaccga |
3040663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 360
Target Start/End: Complemental strand, 3042948 - 3042846
Alignment:
| Q |
258 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
357 |
Q |
| |
|
||||||||||||||||||| |||| || |||| || ||||| ||| |||||| |||||| || | ||| |||||||||||||||||| ||||| ||||| |
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| T |
3042948 |
acttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtaccaagtggatcatcggcatcaaccagtgagtaactttttggacactgacat |
3042849 |
T |
|
| Q |
358 |
gtt |
360 |
Q |
| |
|
||| |
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|
| T |
3042848 |
gtt |
3042846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 360
Target Start/End: Original strand, 25125326 - 25125428
Alignment:
| Q |
258 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
357 |
Q |
| |
|
|||||||||||||||| || |||| || |||| |||| ||| ||| |||||| |||||| || ||||| |||||||||||||||||| ||||| ||||| |
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|
| T |
25125326 |
acttagttcatcttctccacatccttgcatgaagtcttgctcgcaagtaccaagtggatcatcgggatcaaccagtgagtaactttttggacactgacat |
25125425 |
T |
|
| Q |
358 |
gtt |
360 |
Q |
| |
|
||| |
|
|
| T |
25125426 |
gtt |
25125428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 3052618 - 3052679
Alignment:
| Q |
19 |
attagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaa |
82 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||| |
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|
| T |
3052618 |
attagagaataaataactattc--tatttatatagtcaagttgttgatatcatatgaaattgaa |
3052679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 6769879 - 6769824
Alignment:
| Q |
20 |
ttagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaa |
77 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||| |
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|
| T |
6769879 |
ttagagaataaataactattaatta--tatagagtgaagttgttgataacatatgaaa |
6769824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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