View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14734_low_9 (Length: 334)
Name: NF14734_low_9
Description: NF14734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14734_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 8407762 - 8408076
Alignment:
| Q |
17 |
aaatagcaaaatgaaataacatgattttctaacttgaaatagaaatataaacnnnnnnntattttctcacatcaaacagacactagtgtttctggtcttt |
116 |
Q |
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| T |
8407762 |
aaatagcaaaatgaaataacatgattttctaatttgaaatagaaatataaacaaaaaaaaattttctcacatcaaacagacactagtgtttctgatcttt |
8407861 |
T |
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| Q |
117 |
tttcttcatgaagaaagtataaaataagaacttacatagctttcctaattcacatgtttggtcaggctgatgttgacaagaatggaactattgactatca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8407862 |
tttcttcatgaagaaagtataaaataagaacttacatagttttcctaattcacatgtttggtcaggctgatgttgacaagaatggaactattgactatca |
8407961 |
T |
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| Q |
217 |
tgaattcattactgccacaataaaccggcataaacttgagagggaagagaatttgttcaaggcttttcaatactttgacaaggataacagcgggtcagta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8407962 |
tgaattcattactgccacaataaaccggcataaacttgagagggaagagaatttgttcaaggcttttcaatactttgacaaggataacagcgggtcagta |
8408061 |
T |
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| Q |
317 |
tttggttcctttgct |
331 |
Q |
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||||||||||||||| |
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| T |
8408062 |
tttggttcctttgct |
8408076 |
T |
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