View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14735_low_3 (Length: 407)
Name: NF14735_low_3
Description: NF14735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14735_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 9 - 391
Target Start/End: Complemental strand, 29214219 - 29213837
Alignment:
| Q |
9 |
ttctgataaaagcataataaagtaataaacaaacaatttctatctacttcttttctaaaagaaaaaagtgttcannnnnnngtctttctaatttaatcat |
108 |
Q |
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| T |
29214219 |
ttctgataaaagcataataaagtaataaacaaacaatttctatctacttcttttttaaaagaaaaaagtgttcatttttttgtctttctaatttaatcat |
29214120 |
T |
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| Q |
109 |
gaatctgaatcctttttcattttaaagtgatcacaaaattgcatggttactcacttaaattattttgttgtttcgttttaaagtggaccaattatttttt |
208 |
Q |
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| T |
29214119 |
gaatctgagtcctttttcattttaaagtgatcacagaattgcatggttactcacttaaattattttgttgtttcactttaaagtgtaccaattatttttt |
29214020 |
T |
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| Q |
209 |
atcttcaatagaaagaatcttaaacacaacacaaaccaacattgaatctaatataaatcttgtgctatatttgaaaatgaagtactaacaaattggttct |
308 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29214019 |
atcttcaatagaaagaatcttaaacacagcacaaaccaacattgaatctaatataaatcttgtgctatatttgaaaatgaagtactaacaaattggttct |
29213920 |
T |
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| Q |
309 |
tcttaatgatgcatagcatgcagttggatatgtgagtggggatgagtattatggagcaaaagctagcataaatgtgtgggtcc |
391 |
Q |
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| T |
29213919 |
tcttaatgatgcacagcatgcagttggatatgtgagtggggatgagtattatggagcaaaagctagcataaatgtgtgggtcc |
29213837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 388
Target Start/End: Complemental strand, 14496744 - 14496679
Alignment:
| Q |
323 |
agcatgcagttggatatgtgagtggggatgagtattatggagcaaaagctagcataaatgtgtggg |
388 |
Q |
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| T |
14496744 |
agcatgcagttggatatgtgactggaaatcaatactatggagcaaaggctagcataaacgtgtggg |
14496679 |
T |
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