View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14735_low_6 (Length: 281)
Name: NF14735_low_6
Description: NF14735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14735_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 95 - 268
Target Start/End: Original strand, 4383331 - 4383503
Alignment:
| Q |
95 |
gaaagcataccattaaactcaagtcaaaaacccataagaaagccaaacacaattcataagtcacaaattaaaaccttaagcaagtattaagcttttaaca |
194 |
Q |
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| T |
4383331 |
gaaagcataccattaaactcaagtgaaaa-cccataagaaagccaaacacaattcacaagtcacaaattaaaaccttaagcaagtattaaggatttaaca |
4383429 |
T |
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| Q |
195 |
agtaccaagataaacatcgataatagtcaaattctaggtatttaatcagaaacttccatttgatcttcatcttc |
268 |
Q |
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| T |
4383430 |
agtaccaagataaacatcgataatagtcaaattctaggtatttaatcagaaacttccatttgatcttcatcttc |
4383503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 4388413 - 4388537
Alignment:
| Q |
121 |
aaaacccataagaaagccaaacacaattcataagtcacaaattaaaaccttaagc--aagtattaagcttttaacaagtaccaag--ataaacatcgata |
216 |
Q |
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| T |
4388413 |
aaaacccataagaaagccaaacacaattcataagtcacaaattcataccttaagctatagtattaagcttttaacaagtaccaagatataaacatcgata |
4388512 |
T |
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| Q |
217 |
atagtcaaattctaggtatttaatc |
241 |
Q |
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| T |
4388513 |
acagtcaaattctaggtatttaatc |
4388537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 129 - 241
Target Start/End: Original strand, 4375746 - 4375864
Alignment:
| Q |
129 |
taagaaagccaaacacaattcataagtcacaaattaaaaccttaagc----aagtattaagcttttaacaagtaccaag--ataaacatcgataatagtc |
222 |
Q |
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| T |
4375746 |
taagaaagccaaacacaattcataagtcacaaattaaaaccttaagctatatagtattaagcttttaaaaagtaccaagacataaacatcaataatagtc |
4375845 |
T |
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| Q |
223 |
aaattctaggtatttaatc |
241 |
Q |
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| T |
4375846 |
aaattctaggtatttaatc |
4375864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 4388553 - 4388596
Alignment:
| Q |
234 |
atttaatcagaaacttccatttgatcttcatcttccatttcatc |
277 |
Q |
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| T |
4388553 |
atttaatcagaatcttccatttgatcttcatcttccatttcatc |
4388596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 4364181 - 4364239
Alignment:
| Q |
141 |
acacaattcataagtcacaaattaaaaccttaagc--aagtattaagcttttaacaagt |
197 |
Q |
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| T |
4364181 |
acacaattcataagtcacaaattacaaacttaagcttgagtattaagcttttaacaagt |
4364239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Complemental strand, 5727095 - 5727061
Alignment:
| Q |
141 |
acacaattcataagtcacaaattaaaaccttaagc |
175 |
Q |
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| T |
5727095 |
acacaattcataagtcacaaattataaccttaagc |
5727061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 4375880 - 4375913
Alignment:
| Q |
234 |
atttaatcagaaacttccatttgatcttcatctt |
267 |
Q |
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| T |
4375880 |
atttaatcagaatcttccatttgatcttcatctt |
4375913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 3596363 - 3596307
Alignment:
| Q |
187 |
ttttaacaagtaccaaga--taaacatcgataatagtcaaattctaggtatttaatc |
241 |
Q |
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| T |
3596363 |
ttttaacaagtaccaagacataaacatcgataatagtcaaattctaagtatttaatc |
3596307 |
T |
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