View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14736_high_14 (Length: 231)

Name: NF14736_high_14
Description: NF14736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14736_high_14
NF14736_high_14
[»] chr4 (14 HSPs)
chr4 (1-209)||(48898750-48898958)
chr4 (23-73)||(49044045-49044095)
chr4 (23-87)||(48705238-48705302)
chr4 (23-71)||(48903115-48903163)
chr4 (121-173)||(49041111-49041163)
chr4 (23-61)||(7773684-7773722)
chr4 (23-61)||(48852851-48852889)
chr4 (36-66)||(48870713-48870743)
chr4 (36-66)||(48886399-48886429)
chr4 (123-165)||(48891496-48891538)
chr4 (123-181)||(49048528-49048586)
chr4 (32-73)||(48147578-48147619)
chr4 (33-66)||(50250637-50250670)
chr4 (124-172)||(45384842-45384890)
[»] chr8 (1 HSPs)
chr8 (23-165)||(15348940-15349082)
[»] chr7 (1 HSPs)
chr7 (123-175)||(48883878-48883930)
[»] chr6 (1 HSPs)
chr6 (23-61)||(21015994-21016032)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 48898958 - 48898750
Alignment:
Q  1 gacattatcataccatggatggaaatcacgatgaaaagccaaccaatgaatagccccattatagagtgaccctgcatggggattatcattaaaggtactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48898958 gacattatcataccatggatggaaatcacgatgaaaagccaaccaatgaatagccccattatagagtgaccctgcatggggattatcattaaaggtactt 48898859  T
Q  101 gtataagggcattgagtgcacacaatttccttccacacattatctctcaaagagaaaaactccaagtgtgataaaatattaggggattgtgagtgcgagt 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48898858 gtataagggcattgagtgcactcaatttccttccacacattatctctcaatgagaaaaactccaagtgtgataaaatattaggggattgtgagtgcgagt 48898759  T
Q  201 cataggaca 209  Q
    |||||||||    
T  48898758 cataggaca 48898750  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 49044045 - 49044095
Alignment:
Q  23 aaatcacgatgaaaagccaaccaatgaatagccccattatagagtgaccct 73  Q
    |||||| |||||||||||||||| ||||||||||||||| |||| ||||||    
T  49044045 aaatcaagatgaaaagccaaccagtgaatagccccattaaagagcgaccct 49044095  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 48705238 - 48705302
Alignment:
Q  23 aaatcacgatgaaaagccaaccaatgaatagccccattatagagtgaccctgcatggggattatc 87  Q
    |||||| || || |||||||||||||||||||||||||||||||   |||||||| ||| |||||    
T  48705238 aaatcatgacgataagccaaccaatgaatagccccattatagagcacccctgcattgggcttatc 48705302  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 48903163 - 48903115
Alignment:
Q  23 aaatcacgatgaaaagccaaccaatgaatagccccattatagagtgacc 71  Q
    |||||| |||||||||||||| ||||||||||||||||| |||| ||||    
T  48903163 aaatcatgatgaaaagccaactaatgaatagccccattaaagagcgacc 48903115  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 49041111 - 49041163
Alignment:
Q  121 cacaatttccttccacacattatctctcaaagagaaaaactccaagtgtgata 173  Q
    |||||||||||||||||||||| || |||| ||||||| ||||||||| ||||    
T  49041111 cacaatttccttccacacattagctttcaatgagaaaatctccaagtgggata 49041163  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 7773684 - 7773722
Alignment:
Q  23 aaatcacgatgaaaagccaaccaatgaatagccccatta 61  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  7773684 aaatcacgacgcaaagccaaccaatgaatagccccatta 7773722  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 48852889 - 48852851
Alignment:
Q  23 aaatcacgatgaaaagccaaccaatgaatagccccatta 61  Q
    |||||| || |||||||||||||||||||||||||||||    
T  48852889 aaatcatgacgaaaagccaaccaatgaatagccccatta 48852851  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 48870743 - 48870713
Alignment:
Q  36 aagccaaccaatgaatagccccattatagag 66  Q
    |||||||||||||||||||||||||||||||    
T  48870743 aagccaaccaatgaatagccccattatagag 48870713  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 48886429 - 48886399
Alignment:
Q  36 aagccaaccaatgaatagccccattatagag 66  Q
    |||||||||||||||||||||||||||||||    
T  48886429 aagccaaccaatgaatagccccattatagag 48886399  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 48891538 - 48891496
Alignment:
Q  123 caatttccttccacacattatctctcaaagagaaaaactccaa 165  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||    
T  48891538 caatttctttccacatattatctctcaatgagaaaaactccaa 48891496  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 49048528 - 49048586
Alignment:
Q  123 caatttccttccacacattatctctcaaagagaaaaactccaagtgtgataaaatatta 181  Q
    ||||||| ||||| | |||||||||||| |||||||||||||| |||||| ||| ||||    
T  49048528 caatttctttccatatattatctctcaacgagaaaaactccaaatgtgatgaaaaatta 49048586  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 48147578 - 48147619
Alignment:
Q  32 tgaaaagccaaccaatgaatagccccattatagagtgaccct 73  Q
    ||||||||||||||||||||||||||| || | |||||||||    
T  48147578 tgaaaagccaaccaatgaatagccccactaaaaagtgaccct 48147619  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 50250637 - 50250670
Alignment:
Q  33 gaaaagccaaccaatgaatagccccattatagag 66  Q
    ||||||||||||||||||||||||||||| ||||    
T  50250637 gaaaagccaaccaatgaatagccccattaaagag 50250670  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 45384842 - 45384890
Alignment:
Q  124 aatttccttccacacattatctctcaaagagaaaaactccaagtgtgat 172  Q
    |||||| |||||  ||||| ||||||| |||||||||||||||||||||    
T  45384842 aatttctttccatgcattagctctcaacgagaaaaactccaagtgtgat 45384890  T

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Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 15349082 - 15348940
Alignment:
Q  23 aaatcacgatgaaaagccaaccaatgaatagccccattatagagtgaccctgcatggggattatcattaaaggtacttgtataagggcattgagtgcaca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||| | |||  | |||| |||  ||||  |||||||||| | || |||      
T  15349082 aaatcacgatgaaaagccaaccaatgaatagccccattatagagacaccctgctttgggcatctcatcaaaattactcctataagggcaataagggcagt 15348983  T
Q  123 caatttccttccacacattatctctcaaagagaaaaactccaa 165  Q
    | |||||||||||||||||||||||||| ||||||||||||||    
T  15348982 ccatttccttccacacattatctctcaacgagaaaaactccaa 15348940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 48883930 - 48883878
Alignment:
Q  123 caatttccttccacacattatctctcaaagagaaaaactccaagtgtgataaa 175  Q
    ||||||| ||||||| |||||||||||| |||||| ||||||| |||||||||    
T  48883930 caatttctttccacatattatctctcaatgagaaacactccaaatgtgataaa 48883878  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 21016032 - 21015994
Alignment:
Q  23 aaatcacgatgaaaagccaaccaatgaatagccccatta 61  Q
    |||||| || |||||||||||||||||||||||||||||    
T  21016032 aaatcatgacgaaaagccaaccaatgaatagccccatta 21015994  T

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