View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14736_high_15 (Length: 231)
Name: NF14736_high_15
Description: NF14736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14736_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 6752509 - 6752643
Alignment:
| Q |
1 |
ataaacaagtcaccggcgattttcctttcttagagttcaatttcatctttccctaaggtgacactcgcatagtacctgcattcaacaaatgtttgataga |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
6752509 |
ataaacaagtcaccggtgattttcctttcttag--ttcaatttcatctttccctaaggtgacactcacatagtacttgcattcaacaaatgtttgataga |
6752606 |
T |
|
| Q |
101 |
gcatcgcctatttataatgttcacattctcagtcatt |
137 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6752607 |
gcatcacctatttataatgttcacattctcagtcatt |
6752643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 6761973 - 6762168
Alignment:
| Q |
23 |
tcctttcttagagttcaatttcatctttccctaaggtg-acactcgcatagtacctgcattcaacaaatgtttga--tagagcatcgcctatttataatg |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||| ||| |
|
|
| T |
6761973 |
tcctttcttagacttcaatttcatctttccctaaggcgaacactcacatagtacctgcattcaacaaatgtttgagttagaggatcacctatttattatg |
6762072 |
T |
|
| Q |
120 |
ttc-acattctcagtcattnnnnnnnnnnnntttgttttgtataaaacaattagcagaaacttccttcttatgagataattcaggaaatacaaatgaa |
216 |
Q |
| |
|
||| ||||| ||| ||||| || || |||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
6762073 |
ttcaacattttcactcattaaaaataaataacttacttggtataaaataattagcagaaacttccttcttat--gatgattcaggaaatacaaatgaa |
6762168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University