View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14736_high_16 (Length: 224)
Name: NF14736_high_16
Description: NF14736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14736_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 1695821 - 1695661
Alignment:
| Q |
15 |
ttcaaaaacatacacttacgctattagttttcaaagcttcaataaaataacaatgttaactattgannnnnnnggcacttcaactttctataacattcta |
114 |
Q |
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| T |
1695821 |
ttcaataacatacacttacactattagttttcaaagcttcaataaaataacaatgttaactattgatttttttggcacttcaactttctttaacattcta |
1695722 |
T |
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| Q |
115 |
ctaatgaattatttgaatgaattgcatcccaactttctataacactatttggatgaaagat |
175 |
Q |
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| T |
1695721 |
ctaatgaattatttgaatgaattgcagcccaactttctataacactatttggatgaaagat |
1695661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 1685300 - 1685149
Alignment:
| Q |
4 |
taaagataaacttcaaaaacatacacttacgctattagttttcaaagcttcaataaaataacaatgttaactattgannnnnnnggcacttcaactttct |
103 |
Q |
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| T |
1685300 |
taaagataaacttcaaaaacatacacttacactattagtcttaaaagcttcaataaaataacgatgttaactattgatttttttggctcttcaactttct |
1685201 |
T |
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| Q |
104 |
ataacattctactaatgaattatttgaatgaattgcatcccaactttctata |
155 |
Q |
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| T |
1685200 |
ataacatactactaatgaattatttgaatgaattgcagcccaactttctata |
1685149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 1971671 - 1971630
Alignment:
| Q |
113 |
tactaatgaattatttgaatgaattgcatcccaactttctat |
154 |
Q |
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| T |
1971671 |
tactaatgaattatttgaatgaattgcaatccaactttctat |
1971630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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