View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14736_high_2 (Length: 535)

Name: NF14736_high_2
Description: NF14736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14736_high_2
NF14736_high_2
[»] chr1 (7 HSPs)
chr1 (19-535)||(28415915-28416426)
chr1 (19-104)||(1935249-1935334)
chr1 (19-104)||(21912983-21913069)
chr1 (21-104)||(13494612-13494696)
chr1 (19-106)||(28140656-28140746)
chr1 (141-240)||(21913106-21913204)
chr1 (19-104)||(16192025-16192111)
[»] chr4 (1 HSPs)
chr4 (89-236)||(6840496-6840643)
[»] scaffold0063 (1 HSPs)
scaffold0063 (19-100)||(8999-9080)
[»] chr5 (2 HSPs)
chr5 (150-240)||(18017655-18017743)
chr5 (19-106)||(22037322-22037412)
[»] chr7 (3 HSPs)
chr7 (19-100)||(42781198-42781280)
chr7 (19-106)||(1635495-1635585)
chr7 (19-101)||(21837234-21837317)
[»] chr6 (3 HSPs)
chr6 (19-100)||(22245679-22245760)
chr6 (19-104)||(15536398-15536484)
chr6 (19-73)||(19233354-19233411)
[»] scaffold0146 (1 HSPs)
scaffold0146 (19-74)||(37289-37347)
[»] chr2 (1 HSPs)
chr2 (19-106)||(35078376-35078466)
[»] scaffold1484 (1 HSPs)
scaffold1484 (19-105)||(315-404)
[»] scaffold0615 (1 HSPs)
scaffold0615 (23-103)||(3300-3381)


Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 535
Target Start/End: Original strand, 28415915 - 28416426
Alignment:
Q  19 aacactcatatttgtaaaaattgaaaaacaaaattttggcttaac-ttacaagctgaagtttctagaagtcgtggctacctaagcattccatctgtcata 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28415915 aacactcatatttgtgaaaattgaaaaacaaaattttggcttaaccttacaagctgaagtttct-gaagtcgtggctacctaagcattccatctgtcata 28416013  T
Q  118 catttcatcgttgaaaatctatgcaagcatccacctcttttgaacttttaacataccattactgaaaaatttgttactagactaataaaattcacgaaaa 217  Q
    ||||||||| |||||||||||||||| |||| | ||||||||||||||| ||||||||||  ||||||||||||||||| |||| |||||||||||||||    
T  28416014 catttcatcattgaaaatctatgcaaacatc-agctcttttgaacttttgacataccattggtgaaaaatttgttactaaactagtaaaattcacgaaaa 28416112  T
Q  218 agcaagttcattaataataaaca------gatgcagtacaaaagataaggcatcattcaatcctacagagtacagagtgacacattaagagtctaactca 311  Q
    |||||||||||||||||||||||      ||| |||||||||||||||||||||||||||||| |||||||         ||||||||||||||||||||    
T  28416113 agcaagttcattaataataaacaagatcagattcagtacaaaagataaggcatcattcaatcccacagagttt-------cacattaagagtctaactca 28416205  T
Q  312 acataagggaaatggcagaaattaagaaatcaaactacataacaaaataacataaaatttgggttagacaagtgcccaaatcactggttcaggtggatca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28416206 acataagggaaatggcagaaattaagaaatcaaactacataacaaaataacataaaatttgggttagacaagtgcccaaatcactggttcaggtggatca 28416305  T
Q  412 ctcacaagatttcgaaagaacgaatttgtctgctcctgctcttcatcccgccgacctttgtattgcagattttggggcaacatatcttcctccatcatct 511  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28416306 ctcacaagattttgaaagaacaaatttgtctgctcctgctcttcatc---ccgacctttgtattgcagattttggggcaacatatcttcctccatcatct 28416402  T
Q  512 gatgtttctcttctgctgcatctt 535  Q
    ||||||||||||||| ||||||||    
T  28416403 gatgtttctcttctggtgcatctt 28416426  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 1935334 - 1935249
Alignment:
Q  19 aacactcatatttgtaaaaattgaaaaacaaaattttggcttaa-cttacaagctgaagtttctagaagtcgtggctacctaagcat 104  Q
    ||||||||||||||||||||||||||||  |||||| ||| ||| ||| |||||||| ||||||  |||| ||||||||||||||||    
T  1935334 aacactcatatttgtaaaaattgaaaaa-taaatttaggcataaccttgcaagctgaggtttctgaaagttgtggctacctaagcat 1935249  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 21912983 - 21913069
Alignment:
Q  19 aacactcatatttgtaaaaattgaaaaacaaaattttggcttaac-ttacaagctgaagtttctagaagtcgtggctacctaagcat 104  Q
    |||||||||||||||||||||||||||| ||  ||  | | |||| ||||||||||| |||||| ||||| ||||||||||||||||    
T  21912983 aacactcatatttgtaaaaattgaaaaataagtttaggccataaccttacaagctgaggtttctggaagttgtggctacctaagcat 21913069  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 13494696 - 13494612
Alignment:
Q  21 cactcatatttgtaaaaattgaaaaacaaaattttggcttaa-cttacaagctgaagtttctagaagtcgtggctacctaagcat 104  Q
    |||||||||||||||||||||||||||||| ||  | | ||| |||||||| ||| |||||| ||||| || |||||||||||||    
T  13494696 cactcatatttgtaaaaattgaaaaacaaatttaggccataaccttacaagttgaggtttctggaagttgtagctacctaagcat 13494612  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 28140656 - 28140746
Alignment:
Q  19 aacactcatatttgtaaaaattgaaaaacaaaattttggctt---aacttacaagctgaagtttctagaagtcgtggctacctaagcattc 106  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||   ||||||| |||||| |||| | ||||| |||| ||||||| |||||    
T  28140656 aacactcatatttgtgaaaattgtaaaacaaagatttggctttagaacttactagctgaggtttatggaagttgtggttacctaaacattc 28140746  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 21913106 - 21913204
Alignment:
Q  141 caagcatccacctcttttgaacttttaacataccattactgaaaaatttgttactagactaataaaattcacgaaaaagcaagttcattaataataaaca 240  Q
    |||||| ||||||| || |||||||| ||| ||||||  |||||  ||||||||||||||  ||||||||| | ||||| || ||||||||||| |||||    
T  21913106 caagcaaccacctccttggaacttttgacaaaccattggtgaaatctttgttactagactggtaaaattcaag-aaaagtaaattcattaataacaaaca 21913204  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 16192025 - 16192111
Alignment:
Q  19 aacactcatatttgtaaaaattgaaaaacaaaattttggcttaa-cttacaagctgaagtttctagaagtcgtggctacctaagcat 104  Q
    |||||||||||||||||||||||||||| ||| ||  | | ||| |||| ||||||| |||||| |||||  | |||||||||||||    
T  16192025 aacactcatatttgtaaaaattgaaaaataaatttaggccataatcttagaagctgaggtttctggaagttcttgctacctaagcat 16192111  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 6840496 - 6840643
Alignment:
Q  89 gtggctacctaagcattccatc-tgtcatacatttcatcgttgaaaatctatgcaagcatccacctcttttgaacttttaacataccattactgaaaaat 187  Q
    ||||||||||||||||||| || || |||||| |||  | ||||| | | |||||||||  |||||| ||||||||||| ||| |||||| || |||  |    
T  6840496 gtggctacctaagcattccttcatgccatacacttcc-ctttgaatacccatgcaagcaatcacctcctttgaacttttgacaaaccattgctaaaatct 6840594  T
Q  188 ttgttactagactaataaaattcacgaaaaagcaagttcattaataata 236  Q
    ||||||||| | |  ||||||||| ||||||||||||||||||||||||    
T  6840595 ttgttactaaattggtaaaattcaagaaaaagcaagttcattaataata 6840643  T

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Target: scaffold0063 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 8999 - 9080
Alignment:
Q  19 aacactcatatttgtaaaaattgaaaaacaaaattttggcttaa-cttacaagctgaagtttctagaagtcgtggctacctaa 100  Q
    ||||||||||||||||||||||||||||  |||||| ||| ||| |||||||||||| |||||| ||||| ||||||||||||    
T  8999 aacactcatatttgtaaaaattgaaaaa-taaatttaggcataaccttacaagctgaggtttctggaagttgtggctacctaa 9080  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 18017743 - 18017655
Alignment:
Q  150 acctcttttgaacttttaacataccattactgaaaaatttgttactagactaataaaattcacgaaaaagcaagttcattaataataaaca 240  Q
    ||||| ||||||||||||||| ||||||  |||||  | ||||||||||||  |||||||||  |||||| ||||||||||||||||||||    
T  18017743 acctcctttgaacttttaacaaaccattggtgaaa--tctgttactagacttgtaaaattcaataaaaagtaagttcattaataataaaca 18017655  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 22037412 - 22037322
Alignment:
Q  19 aacactcatatttgtaaaaattgaaaaacaaaattttggctt---aacttacaagctgaagtttctagaagtcgtggctacctaagcattc 106  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||   ||||||| |||||| |||| | ||||| |||| ||||||| |||||    
T  22037412 aacactcatatttgtgaaaattgtaaaacaaagatttggctttagaacttactagctgaggtttatggaagttgtggttacctaaacattc 22037322  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 42781198 - 42781280
Alignment:
Q  19 aacactcatatttgtaaaaattgaaaaacaaaattttggcttaa-cttacaagctgaagtttctagaagtcgtggctacctaa 100  Q
    |||||||||||||||||||||||||||| ||| ||  | | ||| |||||||||||| |||||| ||||| ||||||||||||    
T  42781198 aacactcatatttgtaaaaattgaaaaataaatttaggccataaccttacaagctgaggtttctggaagttgtggctacctaa 42781280  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 1635495 - 1635585
Alignment:
Q  19 aacactcatatttgtaaaaattgaaaaacaaaattttggctt---aacttacaagctgaagtttctagaagtcgtggctacctaagcattc 106  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||   ||||||| |||||| |||| | ||||| |||| ||||||| |||||    
T  1635495 aacactcatatttgtgaaaattgtaaaacaaagatttggctttagaacttactagctgaggtttatggaagttgtggttacctaaacattc 1635585  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 21837234 - 21837317
Alignment:
Q  19 aacactcatatttgtaaaaattgaaaaacaaaattttggcttaa-cttacaagctgaagtttctagaagtcgtggctacctaag 101  Q
    ||||||||||| ||| ||||||||||||  ||| | |||||||| |||||||||| |  ||||| ||||| |||||||||||||    
T  21837234 aacactcatatatgtgaaaattgaaaaaacaaaatatggcttaaccttacaagcttagatttctggaagttgtggctacctaag 21837317  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 22245760 - 22245679
Alignment:
Q  19 aacactcatatttgtaaaaattgaaaaacaaaattttggcttaa-cttacaagctgaagtttctagaagtcgtggctacctaa 100  Q
    ||||||||||||||||||||||||||||  |||||| ||| ||| |||||||||||| ||||||  |||| || |||||||||    
T  22245760 aacactcatatttgtaaaaattgaaaaa-taaatttaggcataaccttacaagctgaggtttctgaaagttgttgctacctaa 22245679  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 15536484 - 15536398
Alignment:
Q  19 aacactcatatttgtaaaaattgaaaaacaaaattttggc--ttaacttacaagctgaagtttctagaagtcgtggctacctaagcat 104  Q
    |||||||||||||||||||||| ||||||||| ||| |||  | | |||||||| ||| |||||| ||||| || |||||||||||||    
T  15536484 aacactcatatttgtaaaaattaaaaaacaaa-tttaggccatcaccttacaagttgaggtttctggaagttgtagctacctaagcat 15536398  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 19233411 - 19233354
Alignment:
Q  19 aacactcatatttgtaaaaattgaaaaacaaaattttggctt---aacttacaagctg 73  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||   |||||||||||||    
T  19233411 aacactcatatttgtgaaaattgtaaaacaaaaatttggctttggaacttacaagctg 19233354  T

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Target: scaffold0146 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 37347 - 37289
Alignment:
Q  19 aacactcatatttgtaaaaattgaaaaacaaaattttggctt---aacttacaagctga 74  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||   ||||||||||||||    
T  37347 aacactcatatttgtgaaaattgtaaaacaaaaatttggctttggaacttacaagctga 37289  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 35078466 - 35078376
Alignment:
Q  19 aacactcatatttgtaaaaattgaaaaacaaaattttggctt---aacttacaagctgaagtttctagaagtcgtggctacctaagcattc 106  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||   ||||||| |||||| |||| | ||||| |||| ||||||| |||||    
T  35078466 aacactcatatttgtgaaaattgtaaaacaaagatttggctttagaacttactagctgaggtttatggaagttgtggttacctaaacattc 35078376  T

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Target: scaffold1484 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1484
Description:

Target: scaffold1484; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 404 - 315
Alignment:
Q  19 aacactcatatttgtaaaaattgaaaaacaaaattttggctt---aacttacaagctgaagtttctagaagtcgtggctacctaagcatt 105  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||   ||||||| |||||| |||| | ||||| |||| ||||||| ||||    
T  404 aacactcatatttgtgaaaattgtaaaacaaagatttggctttggaacttactagctgaggtttatggaagttgtggttacctaaacatt 315  T

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Target: scaffold0615 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0615
Description:

Target: scaffold0615; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 3381 - 3300
Alignment:
Q  23 ctcatatttgtaaaaattgaaaaacaaaattttggcttaa-cttacaagctgaagtttctagaagtcgtggctacctaagca 103  Q
    |||||||||||||||||||| ||||||| ||  | | ||| |||||||  ||| |||||| ||||| |||||||||||||||    
T  3381 ctcatatttgtaaaaattgacaaacaaagttaggccataatcttacaatttgaggtttctggaagttgtggctacctaagca 3300  T

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