View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14736_high_4 (Length: 456)
Name: NF14736_high_4
Description: NF14736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14736_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 7165385 - 7165840
Alignment:
| Q |
1 |
tgcactttcccttattcatatcattgagaacacaaaaagttccaatttttcacatacccaaaatacccttcatgctcttgctactgttctcgcaaaatct |
100 |
Q |
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| T |
7165385 |
tgcactttcccttattcataccattgagaacacaaaaagttccaatttttcacatacccaaaatacccttcatgctcttgctactgttctcgcaaaatct |
7165484 |
T |
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| Q |
101 |
ggtaaattggttgagctcaaattgcttattgatgatatcgaaagtaaacggtttggtaatgttaagattagttttatgaatttaacgcagtggtatgctg |
200 |
Q |
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| T |
7165485 |
ggtaaattggttgagctcaaatcgcttattgatgatatcgaaagtaaacggtttggtaatgttaagattagttttatgaatttaatgcagtggtatgctg |
7165584 |
T |
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| Q |
201 |
cagctagggatattgattctgttgttagggtttgggatcagtatagagttgaaagtagaatagtgtgtactgaatcttataacattgttatggctcttta |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7165585 |
cagctaaggatattgattctgttgttagggtttgggatcagtatagagttgaaagtagaatagtgtgtactgaatcttataacattgttatgactcttta |
7165684 |
T |
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| Q |
301 |
tgtagaaatgggtaaggattctgaggctgttggaattttttgtaagatggttgatgacgggtcggttccgaattgtagaagttatagtataataattgag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7165685 |
tgtagaaatgggtaaggattctgaggctgttggaattttttgtaagatggttgatgacgggtcggttccgaattgtagaagttatagtataataattgag |
7165784 |
T |
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| Q |
401 |
caccttgtgaaatgtaggaagtttttggaagctattgaggtttttcatttgttgcc |
456 |
Q |
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| T |
7165785 |
caccttgtgaaatgtaggaagtttttggaagctattgaggtttttaatttgttgcc |
7165840 |
T |
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