View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14736_low_12 (Length: 279)
Name: NF14736_low_12
Description: NF14736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14736_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 46145085 - 46145344
Alignment:
| Q |
20 |
ctagaggggttgttaattgttatgggatcaaagtttttcatgtgtttatttctataagtcactacatatcaatgcataccacaaatcatattacgttgtt |
119 |
Q |
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| T |
46145085 |
ctagaggggttgttaattgttatgggatcaaagtttttcatgtgtttatttctataagtcactacatatcaatgcataccacaaatcatattacgttgtt |
46145184 |
T |
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| Q |
120 |
agtaaatgcatattaagttaaatggaaaccaaaattatacaaaac-nnnnnnnnnnntgttaatatatacttgttaaaacaatnnnnnnnngcgaacaaa |
218 |
Q |
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| T |
46145185 |
agtaaatgcatattaagttaaatggaaaccaaaattatacaaaacaaaaaaaaaaaatgttaatatatacttgttaaaacaat-aaaaaaagcgaacaaa |
46145283 |
T |
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| Q |
219 |
caagtatgatagtgttgttgtgcccatcagtgtactactacatttaacataatatcgtctt |
279 |
Q |
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| T |
46145284 |
caagtatgatagtgttgttgtgcccatcagtgtactactacatttaacataatattgtctt |
46145344 |
T |
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