View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14736_low_3 (Length: 507)
Name: NF14736_low_3
Description: NF14736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14736_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 490
Target Start/End: Original strand, 55852313 - 55852788
Alignment:
| Q |
14 |
cataggtgaaagaatcaacatcattacnnnnnnnntgaaatgcgtgagattcaaaaacattcatcaacatcatcgtgagtgnnnnnnnnnnncataagaa |
113 |
Q |
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| T |
55852313 |
cataagtgaaagaatcaacatcagtacaaaaaaaatgaaatgcgtgagattcaaaaacattcatcaacatcatcgtgagtgaaaaaaaaaa-cataagaa |
55852411 |
T |
|
| Q |
114 |
cattgatcaacatcatcgtgattcgtgaggaaaacaaaaaatcatcaaaatgaagagtaatcaacagtaagatttatcaaaatcagaagtgctcgagatt |
213 |
Q |
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| T |
55852412 |
cattgatcaacatcatcgtgattcgtgagggaaacaaaaaatcatcaaaatgaagagtaatcaacagtaagatttatcaaaatcagaagtgctcgagatt |
55852511 |
T |
|
| Q |
214 |
catgaacatatgaagnnnnnnnntcaaaacaaaccagagattcatcattatcaacaacaacaataaataataatagaatttaagagagagnnnnnnnnnn |
313 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55852512 |
catgaacatatgaagaaaaaaaatcaaaacaaaccagagattcatcattatcaacaacaacaataaataataatagaatttaagagagagaaaaaattaa |
55852611 |
T |
|
| Q |
314 |
nnnnnnnngattatgaactaaagaaagagcctgaaacagcaatagatggaacacaaaatcaggattgaaatcatagaaagagattcgaaaggaacagcat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55852612 |
aataaaaagattatgaactaaagaaagagcctgaaacagcaatagatggaacacaaaatcaggattgaaatcatagaaagagattcgaaaggaacagcat |
55852711 |
T |
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| Q |
414 |
ctatcaacaacggtaggaaaaatcagaaaaagattatcaacatcaagatcaaatagatataacaaaaacaagaatat |
490 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55852712 |
ctatcaacaacggtaggaaaaatcagaaaaagattatcaacatcaagatcaaatagatataacaaaaacaagaatat |
55852788 |
T |
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