View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14736_low_5 (Length: 423)
Name: NF14736_low_5
Description: NF14736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14736_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 32736896 - 32737301
Alignment:
| Q |
1 |
taatttattttaaaacattgtatgttcggtcaattgagtgtacataaattcaactcaacccccattcctcttgtcatgtggtaacccttttttcatgtgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32736896 |
taatttattttaaaacattgtatgttcggtcaattgagtgtacataaattcaactcaacccccattcctcttgtcatgtggtaacccttttttcatgtgg |
32736995 |
T |
|
| Q |
101 |
taacactgcaatgcccaactaggaaacattccatacttccaatggtgttgagctttcatctctaccactaagcaatcctctttcccacttgtctataatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32736996 |
taacactgcaatgcccaactaggaaacattccatacttccaatggttttgagctttcatctctaccactaagcaaccctctttcccacttgtctataatt |
32737095 |
T |
|
| Q |
201 |
aggcgaatctctgcttcaaatctgattttattcacaatttgtaatataatagagaacatttattttatgccgatcaaaggaataaattttaatctcaatt |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32737096 |
aggcgaatctatgcttcaaatctgatttcattcacaatttgtaatataatagagaacatttattttatgccgatcaaaggaataaattttaatctcaatt |
32737195 |
T |
|
| Q |
301 |
ttttcaagtaaagttcacaagacaaaacattaaattatggaatcacattgataatccctatgaaggagtttatggtactacattacatacacacgagact |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32737196 |
ttttcaagtaaagttcacaagacaaaacattaaattatggaatcacattgataatccctatgaagtagtttatggtactacattacatacacacgagact |
32737295 |
T |
|
| Q |
401 |
acaaat |
406 |
Q |
| |
|
|||||| |
|
|
| T |
32737296 |
acaaat |
32737301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University