View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14736_low_6 (Length: 403)

Name: NF14736_low_6
Description: NF14736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14736_low_6
NF14736_low_6
[»] chr1 (2 HSPs)
chr1 (1-388)||(14288263-14288650)
chr1 (16-112)||(28927836-28927932)
[»] chr7 (1 HSPs)
chr7 (15-112)||(32414257-32414354)
[»] chr3 (5 HSPs)
chr3 (156-325)||(7058316-7058485)
chr3 (15-108)||(4150209-4150302)
chr3 (15-108)||(4165978-4166071)
chr3 (15-112)||(13485325-13485422)
chr3 (163-267)||(777706-777810)
[»] chr2 (1 HSPs)
chr2 (157-277)||(43874727-43874847)
[»] scaffold0210 (1 HSPs)
scaffold0210 (26-104)||(15739-15817)
[»] chr6 (3 HSPs)
chr6 (168-277)||(8656167-8656276)
chr6 (220-273)||(34800036-34800089)
chr6 (225-277)||(7140309-7140361)
[»] chr4 (1 HSPs)
chr4 (252-341)||(52187232-52187321)
[»] chr5 (1 HSPs)
chr5 (180-244)||(28091568-28091632)
[»] chr8 (3 HSPs)
chr8 (221-277)||(23273069-23273125)
chr8 (221-277)||(23411140-23411196)
chr8 (204-268)||(27701449-27701513)


Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 14288263 - 14288650
Alignment:
Q  1 ccacaccaaaatcaacatgtttgatagaagagagattgcttttactcccacggagtttttgaagaggagtacccctaaaataaaagttacagagacttgg 100  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14288263 ccacaccaaaatccacatgtttgatagaagagagattgattttactcccacggagtttttgaagaggagtacccctaaaataaaagttacagagacttgg 14288362  T
Q  101 agtggatagctcaaatttgaaagaggcctcaggaggattataccatgaaataatctttaaattaacaagtgtggtactagatatgcagaggttttgttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14288363 agtggatagctcaaatttgaaagaggcctcaggaggattataccatgaaataatctttaaattaacaagtgtggtactagatatgcagaggttttgttta 14288462  T
Q  201 tccacaacttgacatttttcaatgatcaaagtattcaacttgttacatgatgaaaagggctcaacacggccatcatctccgacacaaaagacaaagttct 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  14288463 tccacaacttgacatttttcaatgatcaaagtattcaacttgttacatgatgaaaaaggctcaacacggccatcatctccgacacaaaagacaaagttcc 14288562  T
Q  301 gtagagataatttggttaatgctggcatatttagagaatttgggaataaagtgacatcatcacaattaggacgacaaacagaaagatg 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  14288563 gtagagataatttggttaatgctggcatatttagagaatttgggaataaagtgatatcatcacgattaggacgacaaacagaaagatg 14288650  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 28927836 - 28927932
Alignment:
Q  16 catgtttgatagaagagagattgcttttactcccacggagtttttgaagaggagtacccctaaaataaaagttacagagacttggagtggatagctc 112  Q
    |||| |||||||||||||||||||| |||||||||| ||||||  ||||||| ||| | | ||| | |||| |||| ||| |||| |||||||||||    
T  28927836 catgcttgatagaagagagattgctcttactcccacagagtttcggaagaggtgtaactccaaattcaaaggtacaaagatttggtgtggatagctc 28927932  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 32414354 - 32414257
Alignment:
Q  15 acatgtttgatagaagagagattgcttttactcccacggagtttttgaagaggagtacccctaaaataaaagttacagagacttggagtggatagctc 112  Q
    |||||||||||||||||||||||||| || |||||   |||||| |||| |||| |||||||||||| |||| |||| ||||||||||  ||||||||    
T  32414354 acatgtttgatagaagagagattgctcttgctcccgtagagtttctgaacaggaatacccctaaaatcaaagctacaaagacttggagctgatagctc 32414257  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 325
Target Start/End: Original strand, 7058316 - 7058485
Alignment:
Q  156 tttaaattaacaagtgtggtactagatatgcagaggttttgtttatccacaacttgacatttttcaatgatcaaagtattcaacttgttacatgatgaaa 255  Q
    ||||||||  ||||||||| ||| |||||| ||||||||||||||||   ||||  |||| | | |||||||||| |||||||||||||  |||  ||||    
T  7058316 tttaaattggcaagtgtggcactcgatatgtagaggttttgtttatcacgaactgcacatctgttaatgatcaaactattcaacttgtttaatgtcgaaa 7058415  T
Q  256 agggctcaacacggccatcatctccgacacaaaagacaaagttctgtagagataatttggttaatgctgg 325  Q
    |||| |   |||| |||||||| ||||||||||||| ||||   |||||||| |  ||||||||||||||    
T  7058416 agggattggcacgaccatcatcgccgacacaaaagagaaagccttgtagagacaggttggttaatgctgg 7058485  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 4150302 - 4150209
Alignment:
Q  15 acatgtttgatagaagagagattgcttttactcccacggagtttttgaagaggagtacccctaaaataaaagttacagagacttggagtggata 108  Q
    |||||||||||||||||||||||| | ||  |||||| |||||| |||| |||| ||||| |||||| |||| ||| |||||||||||| ||||    
T  4150302 acatgtttgatagaagagagattgttattgttcccactgagtttctgaataggattacccttaaaatcaaagctacggagacttggagtagata 4150209  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 4166071 - 4165978
Alignment:
Q  15 acatgtttgatagaagagagattgcttttactcccacggagtttttgaagaggagtacccctaaaataaaagttacagagacttggagtggata 108  Q
    |||||||||||||||||||||||| | ||  |||||| |||||| |||| |||| ||||| |||||| |||| ||| |||||||||||| ||||    
T  4166071 acatgtttgatagaagagagattgttattgttcccactgagtttctgaataggattacccttaaaatcaaagctacggagacttggagtagata 4165978  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 13485325 - 13485422
Alignment:
Q  15 acatgtttgatagaagagagattgcttttactcccacggagtttttgaagaggagtacccctaaaataaaagttacagagacttggagtggatagctc 112  Q
    |||||||||||||||||||||||||| ||  ||||| ||||||| |||| |||| ||||   ||||| |||| | |||||||||||||| ||||||||    
T  13485325 acatgtttgatagaagagagattgctcttgatcccatggagtttctgaataggaataccatgaaaatcaaaggtgcagagacttggagtagatagctc 13485422  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 267
Target Start/End: Original strand, 777706 - 777810
Alignment:
Q  163 taacaagtgtggtactagatatgcagaggttttgtttatccacaacttgacatttttcaatgatcaaagtattcaacttgttacatgatgaaaagggctc 262  Q
    |||||||| ||||||| |||||||| |||||||||  ||||| ||||  |||    |||||||||||| |||||||| | ||| ||| |||||| |||||    
T  777706 taacaagtttggtacttgatatgcaaaggttttgtgcatccataactatacaacaatcaatgatcaaactattcaacattttaaatgttgaaaatggctc 777805  T
Q  263 aacac 267  Q
     ||||    
T  777806 gacac 777810  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 277
Target Start/End: Original strand, 43874727 - 43874847
Alignment:
Q  157 ttaaattaacaagtgtggtactagatatgcagaggttttgtttatccacaacttgacatttttcaatgatcaaagtattcaacttgttacatgatgaaaa 256  Q
    ||||||| |||||  ||||||| |||||||| |||||||||  ||||  ||||  |||  | ||||||||||||  ||||||| ||||| ||| ||||||    
T  43874727 ttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaa 43874826  T
Q  257 gggctcaacacggccatcatc 277  Q
    |||||| |||| |||||||||    
T  43874827 gggctcgacacagccatcatc 43874847  T

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Target: scaffold0210 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 15739 - 15817
Alignment:
Q  26 agaagagagattgcttttactcccacggagtttttgaagaggagtacccctaaaataaaagttacagagacttggagtg 104  Q
    |||||||||||||| ||| || ||||  ||||||||||||||| ||||| |||||| |||| || | ||||||||||||    
T  15739 agaagagagattgcatttgcttccacatagtttttgaagaggaatacccgtaaaatcaaagctataaagacttggagtg 15817  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 277
Target Start/End: Original strand, 8656167 - 8656276
Alignment:
Q  168 agtgtggtactagatatgcagaggttttgtttatccacaacttgacatttttcaatgatcaaagtattcaacttgttacatgatgaaaagggctcaacac 267  Q
    ||||||| ||| |||||||||||||||||||| || | |    |||| |||| ||  |||||| |||||||| | ||| ||| |||||| ||||||||||    
T  8656167 agtgtggcacttgatatgcagaggttttgtttgtcaagagagcgacaattttgaagaatcaaactattcaacctcttaaatgctgaaaaaggctcaacac 8656266  T
Q  268 ggccatcatc 277  Q
    ||||||||||    
T  8656267 ggccatcatc 8656276  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 34800036 - 34800089
Alignment:
Q  220 caatgatcaaagtattcaacttgttacatgatgaaaagggctcaacacggccat 273  Q
    |||||| ||||||| ||||| ||||||||| ||||||||||||||||| |||||    
T  34800036 caatgaccaaagtactcaacatgttacatgttgaaaagggctcaacacagccat 34800089  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 7140309 - 7140361
Alignment:
Q  225 atcaaagtattcaacttgttacatgatgaaaagggctcaacacggccatcatc 277  Q
    |||||| |||||||| | ||| ||| |||||| ||||||||||||||||||||    
T  7140309 atcaaactattcaacctcttaaatgctgaaaaaggctcaacacggccatcatc 7140361  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 341
Target Start/End: Complemental strand, 52187321 - 52187232
Alignment:
Q  252 gaaaagggctcaacacggccatcatctccgacacaaaagacaaagttctgtagagataatttggttaatgctggcatatttagagaattt 341  Q
    ||||||||||| ||||  |||||||| ||   ||||||| |||||| || |||||| || |||||||||||||||| ||| |||||||||    
T  52187321 gaaaagggctcgacacaaccatcatcacctcgacaaaagccaaagtactttagagacaagttggttaatgctggcaaattcagagaattt 52187232  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 28091632 - 28091568
Alignment:
Q  180 gatatgcagaggttttgtttatccacaacttgacatttttcaatgatcaaagtattcaacttgtt 244  Q
    ||||| ||||||||||||  |||| |||||| |||||| ||||||| |||||| |||||||||||    
T  28091632 gatatccagaggttttgtgaatcctcaacttcacatttatcaatgaccaaagtgttcaacttgtt 28091568  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 23273069 - 23273125
Alignment:
Q  221 aatgatcaaagtattcaacttgttacatgatgaaaagggctcaacacggccatcatc 277  Q
    ||||| ||| |||| |||| ||||||| | ||||||||||||| |||||||||||||    
T  23273069 aatgaccaatgtatccaacatgttacaagctgaaaagggctcagcacggccatcatc 23273125  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 23411196 - 23411140
Alignment:
Q  221 aatgatcaaagtattcaacttgttacatgatgaaaagggctcaacacggccatcatc 277  Q
    ||||| ||| |||| |||| ||||||| | ||||||||||||| |||||||||||||    
T  23411196 aatgaccaatgtatccaacatgttacaggctgaaaagggctcagcacggccatcatc 23411140  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 27701449 - 27701513
Alignment:
Q  204 acaacttgacatttttcaatgatcaaagtattcaacttgttacatgatgaaaagggctcaacacg 268  Q
    |||| |||||| || |||| |||||||||||||||| | ||| ||  ||||||||||||||||||    
T  27701449 acaatttgacaattctcaaggatcaaagtattcaaccttttaaatcttgaaaagggctcaacacg 27701513  T

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