View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14736_low_7 (Length: 368)
Name: NF14736_low_7
Description: NF14736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14736_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 76 - 352
Target Start/End: Original strand, 41727239 - 41727518
Alignment:
| Q |
76 |
gtgagaagaaaatgacgaatataccccaatagtgataacggataagccaatgaaagcaatgaagaaaagagctgatacgataatagataccccatcatca |
175 |
Q |
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| T |
41727239 |
gtgagaagaaaatgacgaatataccccaatagtgataacggataagccaatgaaagcaatgaagaaaagagctgatacgataatagataccccatcatca |
41727338 |
T |
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| Q |
176 |
gtggcagttgatgaggccaattgctccgaagcatcaatggcaacatcttcaacagctgtagcagcaacaggatttggccatagtttggacttcctttgaa |
275 |
Q |
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| T |
41727339 |
gtggcagttgatgaggccaattgctccgaagcatcaatggcagcatcttcaacagctgtagcagcaacaggatttggccatagtttggacttcctttgaa |
41727438 |
T |
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| Q |
276 |
aatatatggattttctggtt---gtagtgataatgggagagaaagatgaagttgttggtagagagtaaaaacgtgtgttg |
352 |
Q |
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| T |
41727439 |
aatatatggattttctggttgtagtagtgataatgggagagaaagatgaagttgttggaagagagtaaaaacgtgtgttg |
41727518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 41726025 - 41726070
Alignment:
| Q |
16 |
aatataagcaagatcgaagggagtgcctctatattaataaaagaat |
61 |
Q |
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| T |
41726025 |
aatataagcaagatcgaagggagtgcctctatattaataaaagaat |
41726070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 98 - 352
Target Start/End: Original strand, 31682157 - 31682411
Alignment:
| Q |
98 |
accccaatagtgataacggataagccaatgaaagcaatgaagaaaagagctgatacgataatagataccccatcatcagtggcagttgatgaggccaatt |
197 |
Q |
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| T |
31682157 |
accccaatagtgataacggataagccaatgaaagcaatgaagaaaagagccgatacgataatagataccccatcatcagtggcagttgatgaggccaatt |
31682256 |
T |
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| Q |
198 |
gctccgaagcatcaatggcaacatcttcaacagctgtagcagcaacaggatttggccatagtttggacttcctttgaaaatatatggattttctggttgt |
297 |
Q |
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| T |
31682257 |
gctccgaagcatcaatggcagcatcttcaacagctgtagcagcaacaggatttggccatagtttggacttcctttgaaaatatatggattttctggttgt |
31682356 |
T |
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| Q |
298 |
agtgataatgggagagaaagatgaagttgttggtagagagtaaaaacgtgtgttg |
352 |
Q |
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| T |
31682357 |
agtgataatgggagagaaagatgaagttgttggaagagagtaaaaacgtgtgttg |
31682411 |
T |
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