View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14736_low_9 (Length: 354)
Name: NF14736_low_9
Description: NF14736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14736_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 17514172 - 17514385
Alignment:
| Q |
13 |
aatattcgattactcgtaaatttaattaaaattatatgtaaatactgaaatttcccatgttcatgtaaagatttttttttnnnnnnnnnnnncct----t |
108 |
Q |
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| T |
17514172 |
aatattcgattactcctaaatttaattcaaattatatgtaaatactgaaatttcccatgttcatgtaaagatttttttttttttttttttaaaataaact |
17514271 |
T |
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| Q |
109 |
ttttcatgctttactcaaaaacttcacatatctcccatatacatccatgggtagaaattgcccnnnnnnnatatgaattgtgattagacagaatcttcat |
208 |
Q |
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| T |
17514272 |
ttttcatgctttactcaaaatcttcacatatctcccatatacatccatgggtagaaattgccctctttttatttgaagtgtgactagacaaaatcttcat |
17514371 |
T |
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| Q |
209 |
atatataatgagag |
222 |
Q |
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||||||||| |||| |
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| T |
17514372 |
atatataattagag |
17514385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 16855914 - 16855952
Alignment:
| Q |
29 |
taaatttaattaaaattatatgtaaatactgaaatttcc |
67 |
Q |
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| T |
16855914 |
taaatttaattaaaattatatgtaaatactaaaatttcc |
16855952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 16855988 - 16856096
Alignment:
| Q |
107 |
ttttttcatgctttactcaaaaacttcacatatctcccatatacatccatgggtagaaattgcccnnnnnnnatatgaattgtgattagacagaatcttc |
206 |
Q |
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| T |
16855988 |
tttttttatgctttgctcaaaatcttcacttctttcccacatacatgcatgggtggaaattgccctttttatatatgaagtgttattagaaaaaatattc |
16856087 |
T |
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| Q |
207 |
atatatata |
215 |
Q |
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| T |
16856088 |
atatatata |
16856096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 17529364 - 17529417
Alignment:
| Q |
30 |
aaatttaattaaaattatatgtaaatactgaaatttcccatgttcatgtaaaga |
83 |
Q |
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| T |
17529364 |
aaatttaattaaaattatatgtgaatacataaatggcccttgttcatgtaaaga |
17529417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 16856181 - 16856217
Alignment:
| Q |
295 |
gttgttttggcagaaaatttcagaatacctctaaggg |
331 |
Q |
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| T |
16856181 |
gttgttttggcagaaaatttcataatacctttaaggg |
16856217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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