View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14737_high_10 (Length: 262)
Name: NF14737_high_10
Description: NF14737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14737_high_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 46098472 - 46098230
Alignment:
| Q |
20 |
tttaggcataggatacttacgcgatatgacaattgaattgataacctcgtctgcaggatggaatacagagaggacctcaaagcctcgaagatcagaagct |
119 |
Q |
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| T |
46098472 |
tttaggcataggatacttacgcgatatgacaattgaattgataacctcgtctgcaggatggaatacagagaggacctcaaagcctcgaagatcagaagct |
46098373 |
T |
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| Q |
120 |
tcaaccactggatagagaaaagcacgagccccgtgagcactccttaacataagaagtgctcctggggccatgtgcttccccaagtgatcaatgattcgan |
219 |
Q |
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| T |
46098372 |
tcaaccactggatagagaaaagcacgagccccgtgagcactccttaacataagaagtgctcctggggccatgtgcttccccaagtgatcaatgattcgat |
46098273 |
T |
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| Q |
220 |
nnnnnncctccttgtccataccgaccagggcagctaagtaaac |
262 |
Q |
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| T |
46098272 |
ttttttcctccttgtccataccgaccagggcagctaagtaaac |
46098230 |
T |
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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 214
Target Start/End: Complemental strand, 37485230 - 37485042
Alignment:
| Q |
26 |
cataggatacttacgcgatatgacaattgaattgataacctcgtctgcaggatggaatacagagaggacctcaaagcctcgaagatcagaagcttcaacc |
125 |
Q |
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|||||||||| | |||| |||||||| |||||||||||||||||| | ||||| || || ||||| ||||||||||||||||||||| | ||||| |
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| T |
37485230 |
cataggatacctgcgcgctatgacaactgaattgataacctcgtccgttggatgaaacaccgagagcacctcaaagcctcgaagatcattggtatcaaca |
37485131 |
T |
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| Q |
126 |
actggatagagaaaagcacgagccccgtgagcactccttaacataagaagtgctcctggggccatgtgcttccccaagtgatcaatgat |
214 |
Q |
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| T |
37485130 |
accggatacaaaaaagcacgcgcaccgtgagcactcctgagcatcaggagtgctcctggtgccatgtacttagccaaatgctcaatgat |
37485042 |
T |
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