View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14737_high_4 (Length: 417)

Name: NF14737_high_4
Description: NF14737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14737_high_4
NF14737_high_4
[»] chr1 (2 HSPs)
chr1 (21-407)||(17442199-17442586)
chr1 (212-379)||(21545495-21545660)
[»] chr5 (2 HSPs)
chr5 (250-354)||(21943409-21943513)
chr5 (260-307)||(20117121-20117168)
[»] chr7 (4 HSPs)
chr7 (212-307)||(5882036-5882131)
chr7 (250-299)||(8040290-8040339)
chr7 (319-354)||(24578430-24578465)
chr7 (249-294)||(42575233-42575279)
[»] chr4 (3 HSPs)
chr4 (224-289)||(7504292-7504357)
chr4 (314-358)||(3797331-3797375)
chr4 (314-358)||(4216456-4216500)
[»] chr8 (1 HSPs)
chr8 (146-183)||(11154408-11154445)


Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 21 - 407
Target Start/End: Original strand, 17442199 - 17442586
Alignment:
Q  21 agatcatgtgtaaaactaaaggaaatatatctcagctaagatatcaattccaatttagtaacgcaatgatgaattggctattatggt---gtttcttaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||    
T  17442199 agatcatgtgtaaaactaaaggaaatatatctcagctaagatatcaatgccaatttagtaacgcaatgatgaattggctattatggtggtgtttcttaag 17442298  T
Q  118 cgtcctactttttgtttctttctaaaatataccatttgatcggattatataatctgaaccatgtttttgttatataataagaattgttttggaattcaac 217  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||    
T  17442299 cgtcctactttttgtttctttctaaaatatactatttgatcggattatataatatgaaccatgtttttgttatataataaaaattgttttagaattcaac 17442398  T
Q  218 aaactgcttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagacattgagcttatgattatatctcactaaat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  17442399 aaactgcttgaaataatttcgtgtctttgcatattcaacaattttttattatataaaataatataaaagacattgagcttatgattata--tcactaaat 17442496  T
Q  318 cattatatagttgttaatgatatacatttctactaatccactcaaggcctatgctacaatcactgctaatccgctgaaggcctatgctac 407  Q
    |||||||||||||||||||||||||||||||||||| || || ||||||| ||||||||||||| |||||||||| ||| ||||||||||    
T  17442497 cattatatagttgttaatgatatacatttctactaacccgcttaaggcctgtgctacaatcactactaatccgctcaagacctatgctac 17442586  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 212 - 379
Target Start/End: Complemental strand, 21545660 - 21545495
Alignment:
Q  212 ttcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagacattgagcttatgattatatctca 311  Q
    |||||||||||||||| | ||||||| ||||| ||   ||||||||| |||||||| |||||| ||||||||||||||  |||||||| ||||||||  |    
T  21545660 ttcaacaaactgcttgcactaatttcatgtctctgtggattcaacaaattttcattgtataaa-taatataaaagacaacgagcttataattatatcaaa 21545562  T
Q  312 ctaaatcattatatagttgttaatgatatacatttctactaatccac-tcaaggcctatgctacaatca 379  Q
     ||  ||||||| ||||||||||||||||||||||| |||||||| | |||||| |||| |||||||||    
T  21545561 ata--tcattatgtagttgttaatgatatacatttcaactaatccgcttcaaggtctatactacaatca 21545495  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 354
Target Start/End: Complemental strand, 21943513 - 21943409
Alignment:
Q  250 attcaacaatttttcattatataaaataatataaaagacattgagcttatgattatatctcactaaatcattatatagttgttaatgatatacatttcta 349  Q
    ||||||||| |||| |||||||||||||||||||||||||  ||| |||| |||||||   |  ||||||| ||||| |||||||| ||||||||||| |    
T  21943513 attcaacaaatttttattatataaaataatataaaagacaacgagtttataattatattaaaaaaaatcataatatatttgttaataatatacatttcaa 21943414  T
Q  350 ctaat 354  Q
    |||||    
T  21943413 ctaat 21943409  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 20117168 - 20117121
Alignment:
Q  260 ttttcattatataaaataatataaaagacattgagcttatgattatat 307  Q
    |||||| ||||||||||||||||||||| |||||| |||| |||||||    
T  20117168 ttttcaatatataaaataatataaaagagattgaggttataattatat 20117121  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 5882036 - 5882131
Alignment:
Q  212 ttcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagacattgagcttatgattatat 307  Q
    ||||||| |||||||| | | ||||| | ||||||   ||||||||| ||||||||||| ||||||||| |||||||| ||||| ||| |||||||    
T  5882036 ttcaacatactgcttgcactgatttcatatctttgtggattcaacaaattttcattatacaaaataatacaaaagacaatgagcatataattatat 5882131  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 8040339 - 8040290
Alignment:
Q  250 attcaacaatttttcattatataaaataatataaaagacattgagcttat 299  Q
    |||||||||||||| | ||| ||||||||||||||||||| |||||||||    
T  8040339 attcaacaatttttaaatatgtaaaataatataaaagacaatgagcttat 8040290  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 354
Target Start/End: Original strand, 24578430 - 24578465
Alignment:
Q  319 attatatagttgttaatgatatacatttctactaat 354  Q
    ||||||||||||||||||||||||||||| ||||||    
T  24578430 attatatagttgttaatgatatacatttcaactaat 24578465  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 294
Target Start/End: Complemental strand, 42575279 - 42575233
Alignment:
Q  249 tattcaacaatttttcatta-tataaaataatataaaagacattgag 294  Q
    ||||||||||||||||| || ||||||||||||||||||||| ||||    
T  42575279 tattcaacaatttttcaataatataaaataatataaaagacaatgag 42575233  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 7504292 - 7504357
Alignment:
Q  224 cttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagaca 289  Q
    |||||||| ||||| ||||||||   ||| ||||| |||||||||||||||||| |||||||||||    
T  7504292 cttgaaatgatttcatgtctttgtggatttaacaaattttcattatataaaatagtataaaagaca 7504357  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 358
Target Start/End: Complemental strand, 3797375 - 3797331
Alignment:
Q  314 aaatcattatatagttgttaatgatatacatttctactaatccac 358  Q
    |||||||||| ||||||||||  ||||||||||| ||||||||||    
T  3797375 aaatcattatgtagttgttaacaatatacatttcaactaatccac 3797331  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 358
Target Start/End: Complemental strand, 4216500 - 4216456
Alignment:
Q  314 aaatcattatatagttgttaatgatatacatttctactaatccac 358  Q
    |||||||||| ||||||||||  ||||||||||| ||||||||||    
T  4216500 aaatcattatgtagttgttaacaatatacatttcaactaatccac 4216456  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 11154445 - 11154408
Alignment:
Q  146 ataccatttgatcggattatataatctgaaccatgttt 183  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  11154445 ataccatttgctcggattatagaatctgaaccatgttt 11154408  T

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