View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14737_low_11 (Length: 311)
Name: NF14737_low_11
Description: NF14737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14737_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 148
Target Start/End: Complemental strand, 24406374 - 24406228
Alignment:
| Q |
2 |
ccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaagctttcggatataacaacttgaaattttttcaat |
101 |
Q |
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| T |
24406374 |
ccatctccttcacctcctccatatcatccctaccgctataactaacccccacctcccgcgtattaagctttcggatataacaacttgaaattttttcaat |
24406275 |
T |
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| Q |
102 |
gaattatgttcaacattgttgtggttaatttgtatttaagcttttgt |
148 |
Q |
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| T |
24406274 |
gaattatgttcaacattgttgtggttaatttgtatttaagcttttgt |
24406228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 24420347 - 24420158
Alignment:
| Q |
2 |
ccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaagctttcggatataacaacttgaaattttttcaat |
101 |
Q |
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|||||||| |||||||||| |||||||||||||||||| ||||||||||| |||||| |||||||||| ||| ||| | |||||| ||||||| |
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| T |
24420347 |
ccatctccatcacctcctccatatcatccctacctctacaactcacccccgcctcccatctattaagcttccggctat---tatttgaaaaaatttcaat |
24420251 |
T |
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| Q |
102 |
gaattatgttcaacattgttgtggttaatttgtatttaagcttttgttgataataaataaaacagtctactctccacattgaattaagagccttattttg |
201 |
Q |
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| T |
24420250 |
gaattatattcagcattgttgtggttaatttgtattcaatcttttgtt-------aataaaaaagtctatgctttacagtgaattaagagccttattttg |
24420158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 134
Target Start/End: Original strand, 24471273 - 24471402
Alignment:
| Q |
2 |
ccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaagctttcggatataacaacttgaaattttttcaat |
101 |
Q |
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| T |
24471273 |
ccatctccatcacctcctccatatcatccctacctctacagctcacccccgcctcccatctattaagcttccggctatcat---ttgaaattttttcaat |
24471369 |
T |
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| Q |
102 |
gaattatgttcaacattgttgtggttaatttgt |
134 |
Q |
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| T |
24471370 |
gaattatattcagcattgttgtggttaatttgt |
24471402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 24475992 - 24475844
Alignment:
| Q |
1 |
cccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaag-ctttcggatataacaacttgaaattttttca |
99 |
Q |
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||||||||| | |||||||| || |||| || | ||||| ||||||||||| ||||||| ||||||| ||| ||| |||| | |||||||||||||| |
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| T |
24475992 |
cccatctccataacctcctccatctcattccgatctctacaactcacccccgcctcccgtctattaaggcttccggctatagttatttgaaattttttca |
24475893 |
T |
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| Q |
100 |
atgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt |
148 |
Q |
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| T |
24475892 |
aagaattatattcagcattgttctggttaatttgtatcgaagcttttgt |
24475844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 24406231 - 24406184
Alignment:
| Q |
203 |
ttgtagttcaattgtgaatgtatggtgttcatccataagtctatagta |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24406231 |
ttgtagttcaattgtgaatgtatggtgttcatccataagtctatagta |
24406184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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