View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14737_low_17 (Length: 236)
Name: NF14737_low_17
Description: NF14737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14737_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3744778 - 3744558
Alignment:
| Q |
1 |
ttgcataatttcatcatatctacataaaaatacattatgaattatataagtaatctgatcttcatttaaaaactggatttgtgattgtatattgttatgg |
100 |
Q |
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| T |
3744778 |
ttgcataatttcatcatatctacataaaaatacattatgaattatataagtaatctgatcttcatttaaaaactggatttgtgattgtatattgttatgg |
3744679 |
T |
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| Q |
101 |
taagagtctaaattaaatgtgtatgatatatcattaaaaaataacttgtaaagaaaaaaggaagattagttttataacttactcatggtttcaccaccag |
200 |
Q |
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| T |
3744678 |
taagagtctaaattaaatgtgtatgatatatcattaaaaaataacttgtaaagaaaaaaggaagattagttttataacttactcatggtttcaccaccag |
3744579 |
T |
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| Q |
201 |
ctgcgtcaccatagaaggttg |
221 |
Q |
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| T |
3744578 |
ctgcgtcaccatagaaggttg |
3744558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 3739233 - 3739184
Alignment:
| Q |
172 |
ttataacttactcatggtttcaccaccagctgcgtcaccatagaaggttg |
221 |
Q |
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| T |
3739233 |
ttataacttacgcatggtttcaccacccgctgcatcaccgtagaaggttg |
3739184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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