View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14737_low_18 (Length: 226)
Name: NF14737_low_18
Description: NF14737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14737_low_18 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 5466079 - 5465859
Alignment:
| Q |
3 |
aatgacaattatattagttttgattattttagaaaaatccgattaaaattaagtgtcaacaactattcaaatgcaatgaatggtagattcttgttaatat |
102 |
Q |
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| T |
5466079 |
aatgacaattatattagttttgtttattttagaaaaatccgattaaaattaagtgtcaacaactattcaaatgcaatgaatggtagattcttgttaatat |
5465980 |
T |
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| Q |
103 |
taatagaggtatttttgaaacaaagtgcttaataaaaatgaatagcgtaaaaagcaataataccctaaacagaaggacaatgcatgtactatgtttggtg |
202 |
Q |
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| T |
5465979 |
---tagaggtatttttgaaacaaagtgtttagtaaaaatgaatagcgtaaaaagcattaataccctaaagagaaggacaatgcacgtacaatgtttggtg |
5465883 |
T |
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| Q |
203 |
gtaaagtgcataaaattcctcatc |
226 |
Q |
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| T |
5465882 |
gtaaagtgcataaaagtcctcatc |
5465859 |
T |
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