View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14737_low_3 (Length: 508)
Name: NF14737_low_3
Description: NF14737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14737_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 31141113 - 31140616
Alignment:
| Q |
1 |
taattaatggcaaccttagtaattattattaaccaatactaattcaactagaaatgaaaacatactcttgaacatcatgtttttcttaaccaaacactct |
100 |
Q |
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| T |
31141113 |
taattaatggcaaccttagtaatcattaataaccaatactaattcaactagaaatgaaaacatactcttgaacatcatgtttttcttaaccaaacactct |
31141014 |
T |
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| Q |
101 |
tcaacattttcaaccacaaataaaagaacaaaataaataagagtgaaataaatttagtccacaaaattgtagattgatgttggtgttaatataatccnnn |
200 |
Q |
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| T |
31141013 |
tcaacattttcaaccacaaataaaagaacaaaataaataagagtgaaataaatttagtccacaaaattgtagattgatgttggtgttaatataatccaaa |
31140914 |
T |
|
| Q |
201 |
nnnnctaatgaaatttggaaacgatctctaaacttaaaatcattaatcacattaatcttagataacaatttcaaagagtaaatttactatcaactggatt |
300 |
Q |
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| T |
31140913 |
aaaactaatgaaatttggaaacgatctctaaac---------ttaatcacattaatcttagataacaatttcaaagagtaaatttactatcaactggatt |
31140823 |
T |
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| Q |
301 |
gacacatatgattagacattccgctcacatccgcgtaatttagaattcctcatgatta----------------ttatatttttcaaaagaactaaaatg |
384 |
Q |
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| T |
31140822 |
gacacatatgattagacattctgctcacatccgcgtaatttagaattcctcatgattagtgattctctttcaccttatatttttcaaaagaactaaaatg |
31140723 |
T |
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| Q |
385 |
atcaaatgtttctattttcaaatactgctataaaatatcaatcatttcacaaactataaattgatagattcaaaacctaaaactatgtacactaaattag |
484 |
Q |
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| T |
31140722 |
atcaaatgtttctattttcaaatactgctataaaatatcaatcatttcacaaactataaattgatagattcaaaacctaaaactatgtacactaaattag |
31140623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 41 - 332
Target Start/End: Original strand, 31197992 - 31198274
Alignment:
| Q |
41 |
aattcaactagaaatgaaaacatactcttgaacatcatgtttttcttaaccaaacactcttcaacattttcaaccacaaataaaa-gaacaaaataaata |
139 |
Q |
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||||||| | ||| |||||||| | |||| |||||||| ||||| |||| ||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
31197992 |
aattcaatttgaagtgaaaacacaatcttaaacatcattttttt---aaccgaacactcttcaacgttttcaaccacaaataaaaagaacaaaataaata |
31198088 |
T |
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| Q |
140 |
agagtgaaataaatttagtccacaaaattgtagattgatgttggtgttaatataatccnnnnnnnctaatgaaatttggaaacgatctctaaacttaaaa |
239 |
Q |
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| T |
31198089 |
agagtggaataactttaggccttaaaattgtagattgatgtt------aatttaatccatgaaa-ctaatgaaatttggaaatgatctctaaatttaaaa |
31198181 |
T |
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| Q |
240 |
tcattaatcacattaatcttagataacaatttcaaagagtaaatttactatcaactggattgacacatatgattagacattccgctcacatcc |
332 |
Q |
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| T |
31198182 |
ccattaatcacattagtcttagataacaatttcaaagagtaaatttattatcaagaagattgacgcatatgcttagacattctactcacatcc |
31198274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 362 - 448
Target Start/End: Original strand, 31198346 - 31198432
Alignment:
| Q |
362 |
tatttttcaaaagaactaaaatgatcaaatgtttctattttcaaatactgctataaaatatcaatcatttcacaaactataaattga |
448 |
Q |
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| T |
31198346 |
tatttttcaaaagaactaaaatgatcaaatgtttctaatttcaaatactactataaaatatcaatcatttcacgaactataaattga |
31198432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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