View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14737_low_4 (Length: 486)
Name: NF14737_low_4
Description: NF14737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14737_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 11 - 470
Target Start/End: Original strand, 40819161 - 40819621
Alignment:
| Q |
11 |
tatcaaatatgtttggatacaagtttgtaaaatgacgtttgtttaaatctcattctataaacttcatttgattaaaatgtgttgttctaactttctttct |
110 |
Q |
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| T |
40819161 |
tatcaaatatgtttggatacaagtttgtaaaattacgtttgtttaaatctcattctataaacttcatttgattaaaacgtgttgttctaactttctttct |
40819260 |
T |
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| Q |
111 |
gttttataaatagtttgctccaactagattaacatttggacgatttttctaaaacgtatttccaacaaaaaatgtaatttatttggattatatacctttt |
210 |
Q |
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| T |
40819261 |
gttttataaatagtttgctccaactagattaacattttgacgatttttctaaaacgtatttccaacaaaaaatgtaatttatttggattatatacctttt |
40819360 |
T |
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| Q |
211 |
-ttaggcaaaataaattcatatcatttcattgaagataataataatatcaatataatggcgaggagagtaaaagatacgactaatcgctctggctaaatt |
309 |
Q |
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| T |
40819361 |
tttaggcaaaataaattcatatcatttcattcaagataataataatatcaatataatggcgaggagagtaaaagacacgactaatcgctcttgctaaatt |
40819460 |
T |
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| Q |
310 |
atgaacgatatattagattgtctatggataaaagctagagcaaaactagcaatagtggaaagagaaggcctgcagctagaaactaaagtaccaagttcat |
409 |
Q |
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| T |
40819461 |
atgaacgatctattagattgtttatggataaaagctagagcaaaactagcaatagtggaaagagaaggcctgcaagtagaaactaaagtaccaagttcat |
40819560 |
T |
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| Q |
410 |
tctcatgattacaaccattaagcattgcattaacaacaaattgagtttaacacgttctaaa |
470 |
Q |
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| T |
40819561 |
tctcatgattacaaccattaagcattgcattaacaacaaattgagtttaacacgttctaaa |
40819621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 433
Target Start/End: Original strand, 33492254 - 33492299
Alignment:
| Q |
388 |
gaaactaaagtaccaagttcattctcatgattacaaccattaagca |
433 |
Q |
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| T |
33492254 |
gaaactaaagtaccaagttcattctgataagtacagccattaagca |
33492299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 287
Target Start/End: Complemental strand, 32016342 - 32016261
Alignment:
| Q |
208 |
tttttaggcaaaataaattcatatcatttcattgaagataataat---aatatcaatataatggcgaggagagtaaaagatac |
287 |
Q |
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| T |
32016342 |
tttttagggaaagcaacttcatatcatttcattcaagataatagtatcaatat-aatataatgggaaggagagtaaaagatac |
32016261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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