View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14737_low_8 (Length: 405)
Name: NF14737_low_8
Description: NF14737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14737_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 387
Target Start/End: Original strand, 11180279 - 11180655
Alignment:
| Q |
12 |
atcaaaataaaaccatcttgtatgttaatcgaacaatcaacattaaaaactgtgtcccacatttatagcattgaatttgtttctcactttctcatctaat |
111 |
Q |
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| T |
11180279 |
atcaaaataaaaccatcttgtatgttaatcgaacaatcaacattaaaaactgtgtcccacatttatagcattgaacttgtttctcactttctcatctaat |
11180378 |
T |
|
| Q |
112 |
atggaactttcaagctcatatttaatacatcaacaagaattcatcaagcccttattgatagacaaggagaaatgagac-nnnnnnnnntctttatttcga |
210 |
Q |
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| T |
11180379 |
atggaactttcaagctcatatttaatacatcaacaagaattcctcaagcccttattgatagacaaggagaaatgagacaaaaaaaaaatctttatttgga |
11180478 |
T |
|
| Q |
211 |
ttaccatgttaaacgtacgaagttttcatcgccaattaacgatgactaatcttcatttgagaaccgacgagacatatactaggtagattttatcttatca |
310 |
Q |
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||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
11180479 |
ttaccatgttaaacgtacgaagttttcatcgtcgattaatgatgactaatcttcatttgagaaccgacgaggcatatataaggtagattttatcttatca |
11180578 |
T |
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| Q |
311 |
atcaagttttttcatacaaaagagttgacgtttgaacccccttaaatgtcaaattttattattacttgaatcaattc |
387 |
Q |
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|||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11180579 |
atcaagttttttcatacaaaagagctgatgtttgaatccccttaaatgtcaaattttattattacttgaatcaattc |
11180655 |
T |
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