View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14737_low_9 (Length: 346)
Name: NF14737_low_9
Description: NF14737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14737_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 6943957 - 6944302
Alignment:
| Q |
1 |
gaagaaattaaaggcaagaatattaaagaaaactaaagcactgttatatgatttctatcaaaccannnnnnnnnnnnnnattacaccggttttcagaaga |
100 |
Q |
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| T |
6943957 |
gaagcaattaaaggcaagaatattaaagaaaactaaagcactgttatatgatttctatcaaaccattttttgtttttttattacaccggttttcagaaga |
6944056 |
T |
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| Q |
101 |
ctatctgttggaaactggttttaagtgtaagaattcgaactgaaactcgatttgtgtcagtttacatcaaataactacctaatcac---------ttgct |
191 |
Q |
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| T |
6944057 |
ctatctgttggaaactggttttaagtgtaagaattcgaactgaaactcgatttgtgtcggtttacatcaaataactatctaatcacccaaatgcattgct |
6944156 |
T |
|
| Q |
192 |
tccttatgtatttaaaactacagcctaaggcacaaccatggcacaaactggcttatttcttacagtnnnnnnnttaatgaagactctcttggataaaaat |
291 |
Q |
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| T |
6944157 |
tccttatgcatttaaaactacagcctaaggcacaaccatggcacaaactggcttatttcttacagtaaaaaatttaatgaagactctcttggataaaaaa |
6944256 |
T |
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| Q |
292 |
agaggttcgtaattttttaagtaatttcagataggacacacattga |
337 |
Q |
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| T |
6944257 |
aaaggtttgtaattttttaagtaatttcagataggacacacattga |
6944302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 92 - 337
Target Start/End: Original strand, 6940840 - 6941082
Alignment:
| Q |
92 |
ttcagaagactatctgttggaaactggttttaagtgtaagaattcgaactgaaactcgatttgtgtcagtttacatcaaataactacctaatcacttgct |
191 |
Q |
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| T |
6940840 |
ttcagaagactatctgttggaaactggttttaattgtaagaattcgaactgaaactcgatttgtgtcagtttacct--aatcac--ccaaatgcattgct |
6940935 |
T |
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| Q |
192 |
tccttatgtatttaaaactacagcctaaggcacaaccatggcacaaactggcttatttcttacagtnnnnnnnttaatgaagactctcttggat-aaaaa |
290 |
Q |
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| T |
6940936 |
tccttatgtatttaaaactacagcctaaggcacaaccatggcacaaactggcttattacttacagtaaaaaatttaatgaagactctcttggataaaaaa |
6941035 |
T |
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| Q |
291 |
tagaggttcgtaattttttaagtaatttcagataggacacacattga |
337 |
Q |
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| T |
6941036 |
aaaaggtttgtaattttttaagtaatttcagataggacacacattga |
6941082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 6548907 - 6548867
Alignment:
| Q |
22 |
attaaagaaaactaaagcactgttatatgatttctatcaaa |
62 |
Q |
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| T |
6548907 |
attaaagaaaattaaagctctgttatatgatttctatcaaa |
6548867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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