View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14738_high_11 (Length: 356)

Name: NF14738_high_11
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14738_high_11
NF14738_high_11
[»] chr6 (7 HSPs)
chr6 (19-306)||(11192045-11192328)
chr6 (307-350)||(11192358-11192401)
chr6 (307-349)||(12979909-12979951)
chr6 (307-346)||(13021028-13021067)
chr6 (307-339)||(23381948-23381980)
chr6 (307-339)||(23384528-23384560)
chr6 (307-339)||(30655771-30655803)
[»] chr4 (5 HSPs)
chr4 (187-277)||(47411512-47411602)
chr4 (307-350)||(37739536-37739579)
chr4 (139-185)||(47411673-47411719)
chr4 (307-349)||(48013164-48013206)
chr4 (307-350)||(33927276-33927318)
[»] chr2 (4 HSPs)
chr2 (19-76)||(10308332-10308389)
chr2 (307-339)||(3252625-3252657)
chr2 (98-139)||(10308182-10308223)
chr2 (307-339)||(42368478-42368510)
[»] chr8 (1 HSPs)
chr8 (19-76)||(38430968-38431025)
[»] chr5 (1 HSPs)
chr5 (307-350)||(21915427-21915470)
[»] chr3 (2 HSPs)
chr3 (307-350)||(22993461-22993504)
chr3 (307-339)||(7486969-7487001)
[»] chr7 (2 HSPs)
chr7 (307-349)||(18560828-18560870)
chr7 (307-352)||(13907579-13907624)
[»] scaffold0002 (2 HSPs)
scaffold0002 (311-350)||(118227-118266)
scaffold0002 (307-339)||(99009-99041)
[»] chr1 (1 HSPs)
chr1 (307-349)||(7635952-7635994)


Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 11192045 - 11192328
Alignment:
Q  19 agtgagtgtgatctatactatgtcaatcgggataccctattttcttatcacaaagatatatagtgaattattttttcaacaaatgatgtccgtatatgtc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||| |||||||||||| ||||||||    
T  11192045 agtgagtgtgatctatactatgtcaatcgggataccctattttcttatcacaaagata----gtgaattattttttcagcaaatgatgtccttatatgtc 11192140  T
Q  119 gcatcacatcacaataattctaaacagctttgtgttgtaacatttggagacaacagggtcatcaaggcatgggacgcagtcactggtgcaaagcaatata 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11192141 gcatcacatcacaataattctaaacagctttgtgttgtaacatttggagacaacagggtcatcaaggcatgggatgcagtcactggtgcaaagcaatata 11192240  T
Q  219 cttttgagggtcatgaagcgcctatatattctgtatgccctcatcacaaagaaagtatttagttcatcttttggacaacaactaatgg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11192241 cttttgagggtcatgaagcgcctatatattctgtatgccctcatcacaaagaaagtatttagttcatcttttggacaacaactgatgg 11192328  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 307 - 350
Target Start/End: Original strand, 11192358 - 11192401
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaatacaattaagttc 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11192358 ttagcaagtgtactaaaaactatcgaagtaatacaattaagttc 11192401  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 12979909 - 12979951
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaatacaattaagtt 349  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  12979909 ttagcaagtgtactaaaaaccatcgaagtaatacaattaagtt 12979951  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 13021028 - 13021067
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaatacaattaa 346  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  13021028 ttagcaagtgtactaaaaaccatcgaagtaatgcaattaa 13021067  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 339
Target Start/End: Original strand, 23381948 - 23381980
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaata 339  Q
    ||||||||||||||||| |||||||||||||||    
T  23381948 ttagcaagtgtactaaatactatcgaagtaata 23381980  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 339
Target Start/End: Original strand, 23384528 - 23384560
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaata 339  Q
    ||||||||||||||||| |||||||||||||||    
T  23384528 ttagcaagtgtactaaatactatcgaagtaata 23384560  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 30655803 - 30655771
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaata 339  Q
    ||||||||||||||||| |||||||||||||||    
T  30655803 ttagcaagtgtactaaatactatcgaagtaata 30655771  T

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Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 187 - 277
Target Start/End: Complemental strand, 47411602 - 47411512
Alignment:
Q  187 atgggacgcagtcactggtgcaaagcaatatacttttgagggtcatgaagcgcctatatattctgtatgccctcatcacaaagaaagtatt 277  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  47411602 atgggatgcagtcactggtgcaaagcaatatacttttgagggtcatgaagcgcctgtatattctgtatgccctcatcacaaagaaaatatt 47411512  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 350
Target Start/End: Original strand, 37739536 - 37739579
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaatacaattaagttc 350  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  37739536 ttagcaagtgtattaaaaactatcgaagtaatacaattaagttc 37739579  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 47411719 - 47411673
Alignment:
Q  139 taaacagctttgtgttgtaacatttggagacaacagggtcatcaagg 185  Q
    ||||||||||||||||||||||| ||||||  |||||||||||||||    
T  47411719 taaacagctttgtgttgtaacatgtggagaggacagggtcatcaagg 47411673  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 48013164 - 48013206
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaatacaattaagtt 349  Q
    ||||||||||||||||||||||||||||||||| ||| |||||    
T  48013164 ttagcaagtgtactaaaaactatcgaagtaatataataaagtt 48013206  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 350
Target Start/End: Complemental strand, 33927318 - 33927276
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaatacaattaagttc 350  Q
    |||||||||||||||||| |||||||||||||| ||||||||||    
T  33927318 ttagcaagtgtactaaaa-ctatcgaagtaataaaattaagttc 33927276  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 10308389 - 10308332
Alignment:
Q  19 agtgagtgtgatctatactatgtcaatcgggataccctattttcttatcacaaagata 76  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10308389 agtgagtgcgatctatactatgtcaatcgggataccctcttttcttatcacaaagata 10308332  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 3252657 - 3252625
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaata 339  Q
    |||||||||||||||||||||||||||||||||    
T  3252657 ttagcaagtgtactaaaaactatcgaagtaata 3252625  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 10308223 - 10308182
Alignment:
Q  98 caaatgatgtccgtatatgtcgcatcacatcacaataattct 139  Q
    |||||||||||| ||||||||||||||||| |||| ||||||    
T  10308223 caaatgatgtccttatatgtcgcatcacattacaagaattct 10308182  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 339
Target Start/End: Original strand, 42368478 - 42368510
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaata 339  Q
    ||||||||||||||||| |||||||||||||||    
T  42368478 ttagcaagtgtactaaatactatcgaagtaata 42368510  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 38431025 - 38430968
Alignment:
Q  19 agtgagtgtgatctatactatgtcaatcgggataccctattttcttatcacaaagata 76  Q
    ||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||    
T  38431025 agtgagtgtgatctatactatgtcaatcgggatactctattttcctaccacaaggata 38430968  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 350
Target Start/End: Complemental strand, 21915470 - 21915427
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaatacaattaagttc 350  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||    
T  21915470 ttagcaagtgtactaaaaactattgaagtaaaacaattaagttc 21915427  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 350
Target Start/End: Original strand, 22993461 - 22993504
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaatacaattaagttc 350  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||    
T  22993461 ttagcaagtgtactaaaaactatcgaagtaataaaataaagttc 22993504  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 7487001 - 7486969
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaata 339  Q
    ||||||||||||||||| |||||||||||||||    
T  7487001 ttagcaagtgtactaaatactatcgaagtaata 7486969  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 18560828 - 18560870
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaatacaattaagtt 349  Q
    ||||||||||||||||||||||||||||||||| ||| |||||    
T  18560828 ttagcaagtgtactaaaaactatcgaagtaatataataaagtt 18560870  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 13907579 - 13907624
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaatacaattaagttcat 352  Q
    ||||||||||||||||||||||| ||||| ||| || |||||||||    
T  13907579 ttagcaagtgtactaaaaactatagaagtgataaaaataagttcat 13907624  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 350
Target Start/End: Original strand, 118227 - 118266
Alignment:
Q  311 caagtgtactaaaaactatcgaagtaatacaattaagttc 350  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  118227 caagtgtactaaaaactatcgaagtaataaaaataagttc 118266  T

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Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 339
Target Start/End: Original strand, 99009 - 99041
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaata 339  Q
    ||||||||||||||||||| |||||||||||||    
T  99009 ttagcaagtgtactaaaaattatcgaagtaata 99041  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 7635994 - 7635952
Alignment:
Q  307 ttagcaagtgtactaaaaactatcgaagtaatacaattaagtt 349  Q
    |||||||||||||||||||||||| |||||||| ||| |||||    
T  7635994 ttagcaagtgtactaaaaactatcaaagtaatataataaagtt 7635952  T

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