View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14738_high_12 (Length: 355)
Name: NF14738_high_12
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14738_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 120 - 340
Target Start/End: Original strand, 27718193 - 27718416
Alignment:
| Q |
120 |
ataatataatattttatcattatagtgttgcataaataaattactagttgaatcaaataaaacgttcctttnnnnnnn-tacaaataaaacatctgtaga |
218 |
Q |
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| T |
27718193 |
ataatataatattttatcattatagtgttgcataaataaattactagttcaatcaaataaaacgttcctttaaaaaaaatacaaataaaacatctgtaaa |
27718292 |
T |
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| Q |
219 |
aagaaaatcaattgagaagttgttaagaagtagcttctaaaataaaaatttgtattcaacctttaaaataattttataacaagaaatctctatcatatag |
318 |
Q |
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| T |
27718293 |
aagaaaatcaattgagaagttgttaagaagtagcttctaaaataaaaatttgtattcaacctttgaagtaattttataacaagaaatctctatcatatag |
27718392 |
T |
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| Q |
319 |
ttg--tattcaaccattgaagatg |
340 |
Q |
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| T |
27718393 |
ttgtatattcaaccattgaagatg |
27718416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27718044 - 27718080
Alignment:
| Q |
1 |
ttaaatatatcagcctaaaagatgttaacctaatatt |
37 |
Q |
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| T |
27718044 |
ttaaatatattagcctaaaagatgttaacctaatatt |
27718080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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