View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14738_high_13 (Length: 340)
Name: NF14738_high_13
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14738_high_13 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 325
Target Start/End: Complemental strand, 102893 - 102583
Alignment:
| Q |
9 |
agtagcataggaagcaatggtagatagatagcacatacttggtgacagtaaatgtaacgaagaatctctttgcgatgttcttgtgggaagacggaatcaa |
108 |
Q |
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| T |
102893 |
agtagcaaaagaagcaatggtagatagatagcacatacttggtgacagtaaatgtaacgaagaatctctttgcgatgttctcgtgggaagacggaatcaa |
102794 |
T |
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| Q |
109 |
gatgtccagtaatgtagacacagaaaacctgcaatgtagaaaattaattaatattgattacaatgattagcgtttaaacaaggcaggcaggttagtaaat |
208 |
Q |
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| T |
102793 |
gatgtccagtaatgtagacacagaaaacctgcaatgtagaaaattaattaatattgattacaatgattagcgtttaaacaaggcaggcaggttagtaaat |
102694 |
T |
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| Q |
209 |
gtatattttcaaaaattgagtccaatgatttgctggnnnnnnnnnnnnnnnnngatcaatttggagcatattgtccctttccaattattgtaagacctca |
308 |
Q |
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| T |
102693 |
gtatattttcaaaaattgaatccaatgatttgctgg------aaaaaataaaagatcaatttggagcatatcgtccctttccaattattgtaagacttca |
102600 |
T |
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| Q |
309 |
ttgtcctttatgaaagg |
325 |
Q |
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| T |
102599 |
ttgtcctttatgaaagg |
102583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 156
Target Start/End: Complemental strand, 161968 - 161848
Alignment:
| Q |
35 |
gatagcacatacttggtgacagtaaatgtaacgaagaatctctttgcgatgttcttgtgggaagacggaatcaagatgtccagtaatgtagacacagaaa |
134 |
Q |
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| T |
161968 |
gataacacctacctggtgacagtaaatgtaacgaagaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgtatacacagaaa |
161869 |
T |
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| Q |
135 |
acctgcaatgtagaaaattaat |
156 |
Q |
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| T |
161868 |
acctacaa-gtaggaaattaat |
161848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 325
Target Start/End: Complemental strand, 102564 - 102530
Alignment:
| Q |
291 |
aattattgtaagacctcattgtcctttatgaaagg |
325 |
Q |
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| T |
102564 |
aattattgtaagacctcattgtcccttatgaaagg |
102530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 93577 - 93690
Alignment:
| Q |
43 |
atacttggtgacagtaaatgtaacgaagaatctctttgcgatgttcttgtgggaagacggaatcaagatgtccagtaatgtagacacagaaaacctgcaa |
142 |
Q |
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| T |
93577 |
atacctggtgacaatatatgtaacgaagaatctctttacgatgttccggtgggaatacagaatcaagatgtccagtaatgtagagacaaaaaacctgcaa |
93676 |
T |
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| Q |
143 |
tgtagaaaattaat |
156 |
Q |
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| T |
93677 |
tataaaaaattaat |
93690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 13051722 - 13051630
Alignment:
| Q |
51 |
tgacagtaaatgtaacgaagaatctctttgcgatgttcttgtgggaagacggaatcaagatgtccagtaatgtagacacagaaaacctgcaat |
143 |
Q |
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| T |
13051722 |
tgacaatatatgtaatgaagaatctctttgcaatgctcttgtgggaataccaaatcaagatgtcccgtaatgtaaacacaaaaaacctgcaat |
13051630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 141
Target Start/End: Original strand, 12138439 - 12138517
Alignment:
| Q |
63 |
taacgaagaatctctttgcgatgttcttgtgggaagacggaatcaagatgtccagtaatgtagacacagaaaacctgca |
141 |
Q |
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| T |
12138439 |
taacgaagaatctccttacgatgctcttttgagaatatagaatcaagatgtcctgtaatgtacatacagaaaacctgca |
12138517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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