View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14738_high_19 (Length: 280)
Name: NF14738_high_19
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14738_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 24 - 271
Target Start/End: Complemental strand, 7221939 - 7221692
Alignment:
| Q |
24 |
gctcctattcaggctataatgtatgtaatcactcttataattaacctttcctaattcactaagagtgaattaattaaattaatgtgatgcttatatatag |
123 |
Q |
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| T |
7221939 |
gctcctattcaggctataatgtatgtaatcactcttataattaacctttcttaattcactaagagtgaattaattaaattaatgtgatgcttatatatag |
7221840 |
T |
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| Q |
124 |
gatgagctaatgtgggctgcaacatggctatacatggcaacaaggaaatcaatgtacatgaagtacatacaagaagaagcaattagtgctagtgtagcag |
223 |
Q |
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| T |
7221839 |
gatgagttaatgtgggctgcaacatggctatacatggcaacaaggaaatcaatgtacatgaagtacatacaagaagaagcaattagtgctagtgtagcag |
7221740 |
T |
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| Q |
224 |
aattcagttgggaccttaaatatgctggagttcaagttcttctcactc |
271 |
Q |
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| T |
7221739 |
aattcagttgggaccttaaatatgctggagttcaagttcttctcactc |
7221692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 134 - 276
Target Start/End: Complemental strand, 48526427 - 48526285
Alignment:
| Q |
134 |
tgtgggctgcaacatggctatacatggcaacaaggaaatcaatgtacatgaagtacatacaagaagaagcaattagtgctagtgtagcagaattcagttg |
233 |
Q |
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| T |
48526427 |
tgtgggcagcaacttggctatacatggcaacaaagaaatcgttgtacatgaaatatatacaagaagaatcaattagtgctaatgtagcagaattcagttg |
48526328 |
T |
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| Q |
234 |
ggaccttaaatatgctggagttcaagttcttctcactcgacta |
276 |
Q |
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| T |
48526327 |
ggatcttaaatacgctggagttcaagttcttctcactcaacta |
48526285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 115 - 272
Target Start/End: Original strand, 50306490 - 50306651
Alignment:
| Q |
115 |
tatatataggatgagctaatgtgggctgcaacatggctatac----atggcaacaaggaaatcaatgtacatgaagtacatacaagaagaagcaattagt |
210 |
Q |
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| T |
50306490 |
tatatataggatgagctaatgtgggcagcaacatggctatacatacatggcaacaggaaaatctatgtacatgaagtatatacaagaagaagcaattagt |
50306589 |
T |
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| Q |
211 |
gctagtgtagcagaattcagttgggaccttaaatatgctggagttcaagttcttctcactcg |
272 |
Q |
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| T |
50306590 |
gctagtgtaacggtatttagctgggaccttaaatatgtcggagttcaagttcttctcactcg |
50306651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 50306382 - 50306448
Alignment:
| Q |
31 |
ttcaggctataatgtatgtaatcactcttataattaacctttcctaattcactaagagtgaattaat |
97 |
Q |
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| T |
50306382 |
ttcaggctataatgtatgtaatcacttttataatcaaccgttcttaattcactacgagtgaaataat |
50306448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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