View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14738_high_2 (Length: 593)
Name: NF14738_high_2
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14738_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 16 - 589
Target Start/End: Complemental strand, 45605524 - 45604939
Alignment:
| Q |
16 |
acaatcacagtggagtttttgacaatacgattacatgttgatgattgatggaatcacacttatgcaacaacaacaacgttcaattttatccctaagatat |
115 |
Q |
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| T |
45605524 |
acaatcacagtggagtttttggcaatacgattacatgttgacgattgatggaatcacacttatgcaacaacaacaatgttcaattttatctctaagatat |
45605425 |
T |
|
| Q |
116 |
agactctggctctccaaatccagttctcatatgtgtttattcacacccaaccaggaaataccatctcagacaattttttatttt-------aaataaaac |
208 |
Q |
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| T |
45605424 |
agactctggctctccaaattcagttctcatatgtgtttattcacacccaaccatgaaataccatctcagacaatttttaatttttaattttaaataaaac |
45605325 |
T |
|
| Q |
209 |
aatcattctttgtcttttaaggctgttgcttaacaaaaactgtctttaaggttaaggatgctaagacttgtgggttaaagcggtagggaatggcggccaa |
308 |
Q |
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| T |
45605324 |
aatcattctttgtcttt----gctgttgcttaacaaaaactgtctttaaggttaaggatgctaaggcttgtgggttaaagcggtagggaatggcggccaa |
45605229 |
T |
|
| Q |
309 |
caacgtcgtaatagaagagactgacaatgttggagttttacttcaattaaactgttttaa----aagtaatagtgatgtggtagaatattattggtcgac |
404 |
Q |
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| T |
45605228 |
caacgtcgtaatagaagagaccgacaatgttggagttttacttcaattaaactgttttaaaattaagtgatagtgatgtggcagaatattattggtcgac |
45605129 |
T |
|
| Q |
405 |
tgtaatatagttttacat-----gtgcaccataattaaactctttaaaaatatattttataaccaaaaatttaacttcatattttactcaaataactttt |
499 |
Q |
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| T |
45605128 |
tgtaatatagttttatatcgtcggtgcaccataattaaactctttaaaaatatattttataaccaaaaatttagcttcatattttactgaaataactttt |
45605029 |
T |
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| Q |
500 |
tatacattaaatatatatttcacaccaaaaaattcaacttacaaatttctcatgtggctaaatgttatttgttgttggatacactaccta |
589 |
Q |
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| T |
45605028 |
tatacattaaatatatatttcacaccaaaaaattcaacttacaaatttctcatgtggctaaatgttatttgttgttggatacactaccta |
45604939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 10119939 - 10120168
Alignment:
| Q |
17 |
caatcacagtggagtttttgacaatacgattacatgttgatgattgatggaatcacacttatgcaacaacaacaacgttcaattttatccctaagatata |
116 |
Q |
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||||||| ||||||||| || |||||||||||||||| | || |||||||||||||||||||||||||||||| |||||||| |||| || ||| || |
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| T |
10119939 |
caatcacggtggagtttctggaaatacgattacatgtttacaat-gatggaatcacacttatgcaacaacaacaatgttcaattgtatctataggattta |
10120037 |
T |
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| Q |
117 |
gactctggctctccaaatccagttctcatatgtgtttattcacacccaaccaggaaataccatctcagacaattttttattttaaataaaacaatcattc |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||| | |||| |||||||||||||||| |
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| T |
10120038 |
gactctggctctccaaattcagttctcatatgtgtttactcacacccaaccatgaaataccatctcacacaattttatttttttaataaaacaatcattc |
10120137 |
T |
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| Q |
217 |
tttgtcttttaaggctgttgcttaacaaaaa |
247 |
Q |
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| T |
10120138 |
tgtgtctttgaaggttgttgcttaacaaaaa |
10120168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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