View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14738_high_22 (Length: 254)

Name: NF14738_high_22
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14738_high_22
NF14738_high_22
[»] chr4 (12 HSPs)
chr4 (11-236)||(42468562-42468790)
chr4 (11-236)||(42470891-42471119)
chr4 (34-232)||(50855888-50856086)
chr4 (34-236)||(45162038-45162240)
chr4 (34-236)||(45166930-45167132)
chr4 (102-236)||(19429200-19429334)
chr4 (34-234)||(8739251-8739452)
chr4 (175-236)||(13774151-13774212)
chr4 (175-236)||(13776449-13776510)
chr4 (112-236)||(43179576-43179709)
chr4 (11-72)||(45161982-45162046)
chr4 (11-72)||(45166874-45166938)
[»] chr8 (9 HSPs)
chr8 (11-236)||(4876825-4877053)
chr8 (11-236)||(4879153-4879381)
chr8 (11-236)||(24519277-24519505)
chr8 (34-236)||(36379590-36379792)
chr8 (34-236)||(36377305-36377507)
chr8 (34-236)||(21268253-21268454)
chr8 (11-70)||(21268478-21268540)
chr8 (34-70)||(36379816-36379852)
chr8 (34-70)||(36377531-36377567)
[»] chr5 (13 HSPs)
chr5 (34-236)||(37207731-37207933)
chr5 (34-233)||(23164366-23164565)
chr5 (34-236)||(11850030-11850232)
chr5 (35-236)||(22600772-22600973)
chr5 (34-236)||(11852288-11852490)
chr5 (112-236)||(37215400-37215524)
chr5 (34-236)||(1779331-1779550)
chr5 (11-70)||(37207645-37207707)
chr5 (34-70)||(23164589-23164625)
chr5 (175-231)||(21743622-21743678)
chr5 (34-70)||(22600711-22600747)
chr5 (34-70)||(11850256-11850292)
chr5 (34-70)||(11852514-11852550)
[»] chr1 (13 HSPs)
chr1 (34-236)||(29833198-29833400)
chr1 (34-236)||(734701-734903)
chr1 (34-232)||(2403954-2404152)
chr1 (159-236)||(29833856-29833933)
chr1 (38-236)||(8933663-8933878)
chr1 (175-236)||(10909108-10909169)
chr1 (172-236)||(2410072-2410136)
chr1 (175-236)||(10911352-10911413)
chr1 (175-236)||(13011698-13011759)
chr1 (34-70)||(734927-734963)
chr1 (34-97)||(2416660-2416723)
chr1 (98-161)||(18353733-18353796)
chr1 (34-70)||(29833424-29833460)
[»] chr7 (18 HSPs)
chr7 (34-236)||(3932574-3932776)
chr7 (34-236)||(3934813-3935015)
chr7 (34-236)||(19786622-19786824)
chr7 (34-236)||(19788928-19789130)
chr7 (34-236)||(8733620-8733819)
chr7 (35-236)||(36464346-36464547)
chr7 (34-236)||(3052059-3052265)
chr7 (34-236)||(8414614-8414815)
chr7 (34-236)||(42678684-42678903)
chr7 (175-236)||(8731298-8731359)
chr7 (175-236)||(28610363-28610424)
chr7 (127-177)||(19094042-19094092)
chr7 (34-70)||(3051999-3052035)
chr7 (34-70)||(8414839-8414875)
chr7 (11-73)||(3932518-3932583)
chr7 (11-73)||(3934757-3934822)
chr7 (35-70)||(36464572-36464607)
chr7 (198-236)||(18395337-18395375)
[»] chr2 (10 HSPs)
chr2 (34-236)||(31486742-31486944)
chr2 (34-236)||(31489026-31489228)
chr2 (119-236)||(29801924-29802041)
chr2 (99-236)||(34576713-34576860)
chr2 (112-236)||(23859931-23860064)
chr2 (175-236)||(42275678-42275739)
chr2 (175-236)||(42277904-42277965)
chr2 (34-70)||(31486682-31486718)
chr2 (34-70)||(31488966-31489002)
chr2 (119-177)||(8995229-8995287)
[»] scaffold0599 (1 HSPs)
scaffold0599 (138-236)||(1579-1677)
[»] scaffold0050 (2 HSPs)
scaffold0050 (96-236)||(29261-29400)
scaffold0050 (96-236)||(31574-31715)
[»] chr3 (6 HSPs)
chr3 (96-236)||(18966234-18966374)
chr3 (175-236)||(4530835-4530896)
chr3 (181-236)||(4533138-4533193)
chr3 (100-175)||(1701104-1701179)
chr3 (34-79)||(39578242-39578287)
chr3 (118-174)||(8535522-8535578)
[»] chr6 (1 HSPs)
chr6 (34-232)||(21199148-21199365)
[»] scaffold0008 (1 HSPs)
scaffold0008 (11-72)||(73080-73144)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 42468790 - 42468562
Alignment:
Q  11 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactaggg 107  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||| | ||| ||||||| |||||||||||||||||||||    
T  42468790 aatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagatactactaaataagcactaggg 42468691  T
Q  108 aagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagag 207  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42468690 aagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagag 42468591  T
Q  208 ccttcctatagtagtataaataaggctca 236  Q
    |||||||| ||||||||||||||||||||    
T  42468590 ccttcctagagtagtataaataaggctca 42468562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 42471119 - 42470891
Alignment:
Q  11 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactaggg 107  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||| | ||| ||||||| |||||||||||||||||||||    
T  42471119 aatatggaagtctctagaatggtgaagaataatatggaagactctagaatacttgggaataataaggaagctactagatactactaaataagcactaggg 42471020  T
Q  108 aagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagag 207  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42471019 aagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagag 42470920  T
Q  208 ccttcctatagtagtataaataaggctca 236  Q
    |||||||| ||||||||||||||||||||    
T  42470919 ccttcctagagtagtataaataaggctca 42470891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 34 - 232
Target Start/End: Complemental strand, 50856086 - 50855888
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    |||||||||||||| ||||||||||||| ||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  50856086 gaataatatggaagtctctagaatactatggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 50855987  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataagg 232  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50855986 aggcttatgtaccagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataagg 50855888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 45162038 - 45162240
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||||| |||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  45162038 gaataatatagaagtctttagaatactagggaataataagaaagctactagacactactaaataagcactagggaagtctttacttttctagatccttct 45162137  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||||    
T  45162138 aggtttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagtcttcctagaatagtataaataaggc 45162237  T
Q  234 tca 236  Q
    |||    
T  45162238 tca 45162240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 45166930 - 45167132
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||||| |||| || |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  45166930 gaataatatagaagtctttagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtctttacttttctagatccttct 45167029  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||||    
T  45167030 aggtttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagtcttcctagaatagtataaataaggc 45167129  T
Q  234 tca 236  Q
    |||    
T  45167130 tca 45167132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 102 - 236
Target Start/End: Complemental strand, 19429334 - 19429200
Alignment:
Q  102 ctagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaat 201  Q
    ||||||||| ||| ||||||||||||||||||||  |||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||| |||||    
T  19429334 ctagggaagtcttgacttttctagatccttctagttttatgtactagagtattcatatctctagacttttctttgtttatagatatttctagtttgtaat 19429235  T
Q  202 ggagagccttcctatagtagtataaataaggctca 236  Q
    ||||||||| |||| ||||||||||||||||||||    
T  19429234 ggagagcctacctagagtagtataaataaggctca 19429200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 234
Target Start/End: Original strand, 8739251 - 8739452
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaa--taagcactagggaagacttaacttttctagatcctt 131  Q
    ||||||| |||| | |||||||||||||  |||||||| | ||| ||||| |||| ||||||  || |||||||||||  |||||  |||||||||||||    
T  8739251 gaataatgtggatgtctctagaatactaatgaataataaggaagctactatacac-actaaaattatgcactagggaaatcttaatgtttctagatcctt 8739349  T
Q  132 ctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataag 231  Q
    |||| | |||| ||||||| |||||| |||||||| |||||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||||| |||    
T  8739350 ctagtcatatgaactagagcatccatatctctagatttttctttgtttctagatatttctagtttgtaatgtagagccttcctagagttgtataaacaag 8739449  T
Q  232 gct 234  Q
    |||    
T  8739450 gct 8739452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 13774151 - 13774212
Alignment:
Q  175 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctca 236  Q
    ||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||    
T  13774151 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctca 13774212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 13776449 - 13776510
Alignment:
Q  175 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctca 236  Q
    ||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||    
T  13776449 tgtttctagatatttctagtttgtaatgcagagccttcctagagtagtataaataaggctca 13776510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 43179576 - 43179709
Alignment:
Q  112 cttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctt---------tgtttctagatatttctagttggtaatg 202  Q
    |||||||||| | ||||||||||| | |||| ||||||||||||||||||||| |||||||||         ||||| ||||||||||||||| ||||||    
T  43179576 cttaacttttttggatccttctagtcatatgaactagagtatccatgtctctatacttttctttgtaatcaatgtttgtagatatttctagtttgtaatg 43179675  T
Q  203 gagagccttcctatagtagtataaataaggctca 236  Q
     ||||  || ||| |||||||||||| |||||||    
T  43179676 cagagtttttctagagtagtataaattaggctca 43179709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 45161982 - 45162046
Alignment:
Q  11 aatatggaagtctctagaatggt---gaataatatggaagactctagaatactagggaataatat 72  Q
    |||||||||||||||||||||||   |||||||||||||| |||||||| ||||  |||||||||    
T  45161982 aatatggaagtctctagaatggtgaagaataatatggaagtctctagaagactaaagaataatat 45162046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 45166874 - 45166938
Alignment:
Q  11 aatatggaagtctctagaatggt---gaataatatggaagactctagaatactagggaataatat 72  Q
    |||||||||||||||||||||||   |||||||||||||| |||||||| ||||  |||||||||    
T  45166874 aatatggaagtctctagaatggtgaagaataatatggaagtctctagaagactaaagaataatat 45166938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 4876825 - 4877053
Alignment:
Q  11 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactaggg 107  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||| | ||| ||||||| |||||||||||||||||||||    
T  4876825 aatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagaaactactaaataagcactaggg 4876924  T
Q  108 aagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagag 207  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4876925 aagtcttaacttttctagatccttctaggcttatgtactatagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagag 4877024  T
Q  208 ccttcctatagtagtataaataaggctca 236  Q
    |||||||| ||||||||||||||||||||    
T  4877025 ccttcctagagtagtataaataaggctca 4877053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 4879153 - 4879381
Alignment:
Q  11 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactaggg 107  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||| | ||| ||||||| |||||||||||||||||||||    
T  4879153 aatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagaaactactaaataagcactaggg 4879252  T
Q  108 aagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagag 207  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4879253 aagtcttaacttttctagatccttctaggcttatgtactatagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagag 4879352  T
Q  208 ccttcctatagtagtataaataaggctca 236  Q
    |||||||| ||||||||||||||||||||    
T  4879353 ccttcctagagtagtataaataaggctca 4879381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 24519505 - 24519277
Alignment:
Q  11 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactaggg 107  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||| | ||| ||| ||| |||||||||||||||||||||    
T  24519505 aatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctaccagatactactaaataagcactaggg 24519406  T
Q  108 aagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagag 207  Q
    ||| |||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  24519405 aagtcttaacttttctagatccttctaggcttatgtacaaaagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagag 24519306  T
Q  208 ccttcctatagtagtataaataaggctca 236  Q
    |||||||| ||||||||||||||||||||    
T  24519305 ccttcctagagtagtataaataaggctca 24519277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 36379792 - 36379590
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36379792 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 36379693  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  36379692 aggcttatgtactagagtatccatatctctggacttttctttgtttccagatatttctagtttgtaatggagagccttcctagagtagtataaataaggc 36379593  T
Q  234 tca 236  Q
    |||    
T  36379592 tca 36379590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 36377507 - 36377305
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36377507 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 36377408  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    |||||||||||||||||||||||| |||||  ||||||||||||||  ||||||||||| || ||||||||||||||||||| |||||||||||||||||    
T  36377407 aggcttatgtactagagtatccatatctctgaacttttctttgttttcagatatttctactttgtaatggagagccttcctagagtagtataaataaggc 36377308  T
Q  234 tca 236  Q
    |||    
T  36377307 tca 36377305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 21268454 - 21268253
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||  |||||||||| ||| ||||||||||||||||||    
T  21268454 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataaa-actagggaagtcttgacttttctagatccttct 21268356  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    ||  |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  21268355 agttttatgtactaaagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaataaggc 21268256  T
Q  234 tca 236  Q
    |||    
T  21268255 tca 21268253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 21268540 - 21268478
Alignment:
Q  11 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataat 70  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||    
T  21268540 aatatggaagtctctagaatggtgaagaataatatggaagactctagaatactagagaataat 21268478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 36379852 - 36379816
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataat 70  Q
    |||||||||||||||||||||||||||||||||||||    
T  36379852 gaataatatggaagactctagaatactagggaataat 36379816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 36377567 - 36377531
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataat 70  Q
    |||||||||||||||||||||||||||| ||||||||    
T  36377567 gaataatatggaagactctagaatactaaggaataat 36377531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 37207731 - 37207933
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||||| |||| || |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37207731 gaataatatagaagtctgtagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 37207830  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37207831 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggc 37207930  T
Q  234 tca 236  Q
    |||    
T  37207931 tca 37207933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 34 - 233
Target Start/End: Complemental strand, 23164565 - 23164366
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  23164565 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataaacactagggaagtcttaacttttctagatccttct 23164466  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23164465 aggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggc 23164366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 11850232 - 11850030
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||||| |||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  11850232 gaataatatagaagtctctaaaatactagggaataataagaaagctactagacactactaaataagcactagggaagtcttaaattttctagatccttct 11850133  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11850132 aggcttatgtacaagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggc 11850033  T
Q  234 tca 236  Q
    |||    
T  11850032 tca 11850030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 35 - 236
Target Start/End: Original strand, 22600772 - 22600973
Alignment:
Q  35 aataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttcta 134  Q
    |||||||| |||| ||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22600772 aataatatagaagtctctagaatactatggaataataagaaagctacttgacactactaaataagcactagggaagtcttaacttttctagatccttcta 22600871  T
Q  135 ggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggct 234  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  22600872 ggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagagtcttgctaaagtagtataaataaggct 22600971  T
Q  235 ca 236  Q
    ||    
T  22600972 ca 22600973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 11852490 - 11852288
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| | ||||||||||||  ||||||    
T  11852490 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcataacttttctaggaccttct 11852391  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11852390 aggcttatgtactagagtatccatatctctagacttttatttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggc 11852291  T
Q  234 tca 236  Q
    |||    
T  11852290 tca 11852288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 37215400 - 37215524
Alignment:
Q  112 cttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagcctt 211  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  37215400 cttaacttttctagatccttctaggcttatatactagagtatccatgtctctaaacttttctttgtttctagatatttctagttggtaatgaagagcctt 37215499  T
Q  212 cctatagtagtataaataaggctca 236  Q
    |||| ||||||||||||||||||||    
T  37215500 cctagagtagtataaataaggctca 37215524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 1779550 - 1779331
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacact--actaaataa------gcactagggaagacttaacttttctag 125  Q
    ||||||||| |||| ||||| ||||||| ||||||||| | ||| |||||||||||  |||||||||      |||||||  ||  |||||  |||||||    
T  1779550 gaataatatagaagtctctaaaatactatggaataataaggaagctactagacactccactaaataaaataaagcactagaaaaatcttaatgtttctag 1779451  T
Q  126 atccttctaggcttatgtactagagtatccatgtctctagacttttctttgt---------ttctagatatttctagttggtaatggagagccttcctat 216  Q
    |||||||||| | |||| |||||||||||||||| ||||| | |||||||||         ||||||||| |||||||| |||||| ||||||||||||     
T  1779450 atccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagagccttcctag 1779351  T
Q  217 agtagtataaataaggctca 236  Q
    ||| ||||||||||||||||    
T  1779350 agtggtataaataaggctca 1779331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 37207645 - 37207707
Alignment:
Q  11 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataat 70  Q
    ||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||    
T  37207645 aatatggaagtctctagaatgatgaagaataatatggaagactctagaatactagggaataat 37207707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 23164625 - 23164589
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataat 70  Q
    |||||||||||||||||||||||||||||||||||||    
T  23164625 gaataatatggaagactctagaatactagggaataat 23164589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 21743622 - 21743678
Alignment:
Q  175 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataag 231  Q
    ||||| ||||||||| ||||| ||| || |||||||||||| |||||||||||||||    
T  21743622 tgtttttagatatttttagtttgtagtgtagagccttcctagagtagtataaataag 21743678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 22600711 - 22600747
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataat 70  Q
    ||||||||||||||||||||||||| |||||||||||    
T  22600711 gaataatatggaagactctagaatattagggaataat 22600747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 11850292 - 11850256
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataat 70  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  11850292 gaataatatggaagactcttgaatactatggaataat 11850256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 11852550 - 11852514
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataat 70  Q
    |||||||||||||||||||||||||||| | ||||||    
T  11852550 gaataatatggaagactctagaatactatgaaataat 11852514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 29833400 - 29833198
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29833400 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 29833301  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  29833300 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaataaggc 29833201  T
Q  234 tca 236  Q
    |||    
T  29833200 tca 29833198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 734903 - 734701
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||||| |||| ||||||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  734903 gaataatatagaagtctctagaatactagggaataacaaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 734804  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  734803 aggtttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagaatagtataaataaggc 734704  T
Q  234 tca 236  Q
    |||    
T  734703 tca 734701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 34 - 232
Target Start/End: Complemental strand, 2404152 - 2403954
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  2404152 gaataatatagaagtctctagaatactagggaataataaggaagctactagatactactaaataagcactagggaagtcttaacttttctagatccttct 2404053  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataagg 232  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||    
T  2404052 aggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagtcttcctagagtagtataaataagg 2403954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 29833856 - 29833933
Alignment:
Q  159 tctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctca 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29833856 tctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggctca 29833933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 8933878 - 8933663
Alignment:
Q  38 aatatggaagactctagaatactagggaataatatgaaagttactagacact--actaaataa------gcactagggaagacttaacttttctagatcc 129  Q
    |||||||||| ||||| ||||||| ||||||||| | ||| || ||||||||  |||||||||      |||||||| ||  |||||  |||||||||||    
T  8933878 aatatggaagtctctaaaatactatggaataataaggaagctattagacactctactaaataaaataaagcactaggaaaatcttaatgtttctagatcc 8933779  T
Q  130 ttctaggcttatgtactagagtatccatgtctctagacttttctttgt---------ttctagatatttctagttggtaatggagagccttcctatagta 220  Q
    |||||| | |||| |||||||||||||||| ||||| | |||||||||         ||||||||| |||||||| |||||| ||| |||||||| ||||    
T  8933778 ttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaaccttcctagagta 8933679  T
Q  221 gtataaataaggctca 236  Q
    ||||||||||||||||    
T  8933678 gtataaataaggctca 8933663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 10909108 - 10909169
Alignment:
Q  175 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctca 236  Q
    ||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||    
T  10909108 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctca 10909169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 2410136 - 2410072
Alignment:
Q  172 ctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctca 236  Q
    ||||||||||||||||| ||| || ||||||||||||||||||| ||||||||||||||||||||    
T  2410136 ctttgtttctagatattgctaatttgtaatggagagccttcctagagtagtataaataaggctca 2410072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 10911352 - 10911413
Alignment:
Q  175 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctca 236  Q
    ||||||||||||||||||||| |||||| ||| |||||||| ||||||||||||||||||||    
T  10911352 tgtttctagatatttctagtttgtaatgtagacccttcctagagtagtataaataaggctca 10911413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 13011698 - 13011759
Alignment:
Q  175 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctca 236  Q
    ||||||||||||||| |||||  ||||| |||||||||||| ||||||||||||||||||||    
T  13011698 tgtttctagatatttttagtttttaatgtagagccttcctagagtagtataaataaggctca 13011759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 734963 - 734927
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataat 70  Q
    |||||||||||||||||||||||||||||||||||||    
T  734963 gaataatatggaagactctagaatactagggaataat 734927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 2416723 - 2416660
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaata 97  Q
    ||||||||| |||  ||||||||||||||||||||||| | ||| ||||||| |||||||||||    
T  2416723 gaataatatagaactctctagaatactagggaataataaggaagctactagatactactaaata 2416660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 18353733 - 18353796
Alignment:
Q  98 agcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtct 161  Q
    ||||||||| ||  |||| ||||||||||||||||||| | |||| ||||||||||||||||||    
T  18353733 agcactaggaaaatcttatcttttctagatccttctagtcatatgaactagagtatccatgtct 18353796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 29833460 - 29833424
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataat 70  Q
    ||||||||||||||||||||||||||||| |||||||    
T  29833460 gaataatatggaagactctagaatactagagaataat 29833424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 3932574 - 3932776
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    |||||||||||||||||||||||||||||||||||||| | ||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  3932574 gaataatatggaagactctagaatactagggaataataaggaagctactagatactactaaataagcactagggaagtcttaacttttctagatccttct 3932673  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  3932674 aggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagaatagtataaataaggc 3932773  T
Q  234 tca 236  Q
    |||    
T  3932774 tca 3932776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 3934813 - 3935015
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    |||||||||||||||||||||||||||||||||||||| | ||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  3934813 gaataatatggaagactctagaatactagggaataataaggaagctactagatactactaaataagcactagggaagtcttaacttttctagatccttct 3934912  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  3934913 aggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagaatagtataaataaggc 3935012  T
Q  234 tca 236  Q
    |||    
T  3935013 tca 3935015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 19786622 - 19786824
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||| |||||| |||||||||| |||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19786622 gaataatgtggaagtctctagaatattagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 19786721  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  19786722 aggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaataaggc 19786821  T
Q  234 tca 236  Q
    |||    
T  19786822 tca 19786824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 19788928 - 19789130
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||| |||||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19788928 gaataatgtggaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 19789027  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||    
T  19789028 aggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttactagagtagtataaataaggc 19789127  T
Q  234 tca 236  Q
    |||    
T  19789128 tca 19789130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 8733819 - 8733620
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  8733819 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggt---cttaacttttctagatccttct 8733723  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  8733722 aggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaaaggagagccttcctagagtagtataaataaggc 8733623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 35 - 236
Target Start/End: Complemental strand, 36464547 - 36464346
Alignment:
Q  35 aataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttcta 134  Q
    |||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  36464547 aataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttgacttttctagatccttcta 36464448  T
Q  135 ggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggct 234  Q
    |  |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||    
T  36464447 gttttatgtactagagtatccatatctccagacttttctttgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggct 36464348  T
Q  235 ca 236  Q
    ||    
T  36464347 ca 36464346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 3052059 - 3052265
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataa----tatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatcc 129  Q
    ||||||||| |||| ||||||||||||||  |||||    || | ||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  3052059 gaataatatagaagtctctagaatactagataataaataataaggaagctactagacactactaaataagcattagggaagtcttaacttttctagatcc 3052158  T
Q  130 ttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaata 229  Q
    ||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  3052159 ttctagttttatgtactagaatatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaata 3052258  T
Q  230 aggctca 236  Q
    |||||||    
T  3052259 aggctca 3052265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 8414815 - 8414614
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||  |||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||    
T  8414815 gaataatatagaagtctctagaatactagggaataataaggaaactactagacactactaaataagcactagggaagtcttgacttttctagatc-ttct 8414717  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    ||  |||| ||||| | ||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||    
T  8414716 agttttatatactaaaatatccatatctctagacttttctttgtttctagatttttctagtttgtaatggagagccttcctagagtagtataaataaggc 8414617  T
Q  234 tca 236  Q
    |||    
T  8414616 tca 8414614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 42678903 - 42678684
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacact--actaaataa------gcactagggaagacttaacttttctag 125  Q
    |||||||||||||| ||||| ||||||| ||||||||| | ||| |||||||||||  |||||||||      |||||||| ||  |||||  |||||||    
T  42678903 gaataatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcactaggaaaatcttaatgtttctag 42678804  T
Q  126 atccttctaggcttatgtactagagtatccatgtctctagacttttctttgt---------ttctagatatttctagttggtaatggagagccttcctat 216  Q
    |||||||||| | ||||  ||||||||||||||| ||||| | |||||||||         ||||||||| |||||||| |||||| ||| |||||| |     
T  42678803 atccttctagtcatatgacctagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaaccttcccaa 42678704  T
Q  217 agtagtataaataaggctca 236  Q
     |||||||||||||||||||    
T  42678703 ggtagtataaataaggctca 42678684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 8731359 - 8731298
Alignment:
Q  175 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctca 236  Q
    |||||||||||||||||| || |||||| |||||||||||| ||||||||||||||||||||    
T  8731359 tgtttctagatatttctaatttgtaatgtagagccttcctagagtagtataaataaggctca 8731298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 28610424 - 28610363
Alignment:
Q  175 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctca 236  Q
    ||||||||||||||||||||| |||||| |||||||| ||| ||||||||||||||||||||    
T  28610424 tgtttctagatatttctagtttgtaatgtagagcctttctagagtagtataaataaggctca 28610363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 19094092 - 19094042
Alignment:
Q  127 tccttctaggcttatgtactagagtatccatgtctctagacttttctttgt 177  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  19094092 tccttctagacttataaactagagtatccatgtctctagacttttctttgt 19094042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 3051999 - 3052035
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataat 70  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3051999 gaataatatggaagactctagaatactagagaataat 3052035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 8414875 - 8414839
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataat 70  Q
    ||||||||||||||||||||||||||||| |||||||    
T  8414875 gaataatatggaagactctagaatactagagaataat 8414839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 3932518 - 3932583
Alignment:
Q  11 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataatatg 73  Q
    ||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||  ||||||||||    
T  3932518 aatatggaagtctctagaatgatgaagaataatatggaagtctctagaagactaaagaataatatg 3932583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 3934757 - 3934822
Alignment:
Q  11 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataatatg 73  Q
    ||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||  ||||||||||    
T  3934757 aatatggaagtctctagaatgatgaagaataatatggaagtctctagaagactaaagaataatatg 3934822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 36464607 - 36464572
Alignment:
Q  35 aataatatggaagactctagaatactagggaataat 70  Q
    |||||||||||||||||||||||||||| |||||||    
T  36464607 aataatatggaagactctagaatactagagaataat 36464572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 18395337 - 18395375
Alignment:
Q  198 taatggagagccttcctatagtagtataaataaggctca 236  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  18395337 taatgtagagccttcctagagtagtataaataaggctca 18395375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 31486742 - 31486944
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31486742 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 31486841  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  31486842 aggcttatgtactagagtatccatatctctggacttttctttgtttccagatatttctagtttgtaatggagagccttcctagagtagtataaataaggc 31486941  T
Q  234 tca 236  Q
    |||    
T  31486942 tca 31486944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 31489026 - 31489228
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 133  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  31489026 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttagcttttctagatccttct 31489125  T
Q  134 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 233  Q
    | |||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  31489126 aagcttatgtactagagtatccatatctctggacttttctttgtttccagatatttctagtttgtaatggagagccttcctaaagtagtataaataaggc 31489225  T
Q  234 tca 236  Q
    |||    
T  31489226 tca 31489228  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 29801924 - 29802041
Alignment:
Q  119 tttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatag 218  Q
    |||||| |||||||||| | |||| |||| || |||||| ||||||||||||||||||||| ||||||||||||||| ||||||| ||| ||||||| ||    
T  29801924 tttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttgtagatatttctagtttgtaatggggagtcttcctagag 29802023  T
Q  219 tagtataaataaggctca 236  Q
    ||||||||||||||||||    
T  29802024 tagtataaataaggctca 29802041  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 34576860 - 34576713
Alignment:
Q  99 gcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctt---------tgtttctagatattt 189  Q
    ||||||| |||  |||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||||||||         |||||||||||||||    
T  34576860 gcactagagaaatcttaacttttctagatccttctagtcatatgaactagagtattcatgtctctagacttttctttgtaatcaatgtttctagatattt 34576761  T
Q  190 ctagttggtaatggagagccttcct-atagtagtataaataaggctca 236  Q
    |||||| |||||| ||||||||||| | | ||||||||||||||||||    
T  34576760 ctagtttgtaatgtagagccttcctaagattagtataaataaggctca 34576713  T

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Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 23859931 - 23860064
Alignment:
Q  112 cttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgt---------ttctagatatttctagttggtaatg 202  Q
    |||| ||||||||||||||||||| |||||| |||||||||| ||||| ||||| | |||||||||         ||||||||| |||||||| ||||||    
T  23859931 cttagcttttctagatccttctagtcttatgaactagagtatgcatgtttctaggcctttctttgtaatcaatatttctagataattctagtttgtaatg 23860030  T
Q  203 gagagccttcctatagtagtataaataaggctca 236  Q
     |||||||||||| ||||||||||||||||||||    
T  23860031 tagagccttcctagagtagtataaataaggctca 23860064  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 42275739 - 42275678
Alignment:
Q  175 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctca 236  Q
    ||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||    
T  42275739 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctca 42275678  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 42277965 - 42277904
Alignment:
Q  175 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctca 236  Q
    ||||||||||||||||||||| |||||| |||| ||||||| ||||||||||||||||||||    
T  42277965 tgtttctagatatttctagtttgtaatgtagagtcttcctagagtagtataaataaggctca 42277904  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 31486682 - 31486718
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataat 70  Q
    |||||||||||||||||||||||||||||||||||||    
T  31486682 gaataatatggaagactctagaatactagggaataat 31486718  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 31488966 - 31489002
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataat 70  Q
    |||||||||||||||||||||||||||||||||||||    
T  31488966 gaataatatggaagactctagaatactagggaataat 31489002  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 8995287 - 8995229
Alignment:
Q  119 tttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgt 177  Q
    ||||||||||||||||| | |||| |||||||||||||||  ||||| | |||||||||    
T  8995287 tttctagatccttctagtcatatgaactagagtatccatgcttctaggcctttctttgt 8995229  T

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Target: scaffold0599 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 1579 - 1677
Alignment:
Q  138 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctca 236  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  1579 ttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctca 1677  T

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Target: scaffold0050 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 96 - 236
Target Start/End: Original strand, 29261 - 29400
Alignment:
Q  96 taagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagtt 195  Q
    ||||||||||||||  |||||  ||||||||||||||||| | |||||||||||  |||||| |||||||||||||||| |||||||||||||| |||||    
T  29261 taagcactagggaaatcttaatgtttctagatccttctagtcatatgtactagaacatccatatctctagacttttctt-gtttctagatatttttagtt 29359  T
Q  196 ggtaatggagagccttcctatagtagtataaataaggctca 236  Q
     ||||||||||| ||||||| ||||||||||||||||||||    
T  29360 tgtaatggagagtcttcctagagtagtataaataaggctca 29400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 96 - 236
Target Start/End: Original strand, 31574 - 31715
Alignment:
Q  96 taagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgt--ctctagacttttctttgtttctagatatttctag 193  Q
    ||||||||||||||  |||||  ||||||||||||||||| | |||||||||||  |||||| |  ||||||||||||||| |||| |||||||||||||    
T  31574 taagcactagggaaatcttaatgtttctagatccttctagtcatatgtactagaacatccatatatctctagacttttctt-gtttttagatatttctag 31672  T
Q  194 ttggtaatggagagccttcctatagtagtataaataaggctca 236  Q
    || ||||||||||||||||||| ||||||||||||||||||||    
T  31673 tttgtaatggagagccttcctagagtagtataaataaggctca 31715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 236
Target Start/End: Complemental strand, 18966374 - 18966234
Alignment:
Q  96 taagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagtt 195  Q
    ||||||||||| ||  |||||  ||||||||||||||||| | || |||||||||||||||| ||||| |||||||||| |||||||||||||||||||     
T  18966374 taagcactaggaaaatcttaatgtttctagatccttctagtcatacgtactagagtatccatatctcttgacttttcttggtttctagatatttctagtg 18966275  T
Q  196 ggtaatggagagccttcctatagtagtataaataaggctca 236  Q
     || |||||| | ||||||| ||||||||||||||||||||    
T  18966274 tgtcatggagtgtcttcctagagtagtataaataaggctca 18966234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 4530835 - 4530896
Alignment:
Q  175 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctca 236  Q
    ||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||    
T  4530835 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctca 4530896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 4533138 - 4533193
Alignment:
Q  181 tagatatttctagttggtaatggagagccttcctatagtagtataaataaggctca 236  Q
    ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||    
T  4533138 tagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctca 4533193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 1701104 - 1701179
Alignment:
Q  100 cactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttcttt 175  Q
    ||||||||||  |||||||||||||||||||||||| | |||| | |||| ||||||| | ||||| |||||||||    
T  1701104 cactagggaaatcttaacttttctagatccttctagtcatatgaattagattatccatatttctaggcttttcttt 1701179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 39578242 - 39578287
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagtt 79  Q
    |||| |||||||||||||||||||||||  ||||||| ||||||||    
T  39578242 gaatgatatggaagactctagaatactaaagaataatgtgaaagtt 39578287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 8535522 - 8535578
Alignment:
Q  118 ttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctt 174  Q
    |||| ||||||||||||| | |||  |||| ||||||||| ||||||||||||||||    
T  8535522 ttttttagatccttctagtcatataaactaaagtatccatatctctagacttttctt 8535578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 21199148 - 21199365
Alignment:
Q  34 gaataatatggaagactctagaatactagggaataatatgaaagttactagacact--actaaataa------gcactagggaagacttaacttttctag 125  Q
    |||||||||||||| ||||||||||||| ||||||||| | ||| ||||| |||||  |||||||||      |||||||  ||  |||||  |||||||    
T  21199148 gaataatatggaagtctctagaatactatggaataataaggaagctactatacactctactaaataaaataaagcactagttaaatcttaatgtttctag 21199247  T
Q  126 atccttctaggcttatgtactagagtatccat--gtctctagacttttctttgt---------ttctagatatttctagttggtaatggagagccttcct 214  Q
    |||||||||| | |||| ||| ||||||||||  |||||||| | |||| ||||         |||||||||||||||||| |||||| | |||||||||    
T  21199248 atccttctagtcatatgaactggagtatccatatgtctctaggcctttcattgtaatcaatgtttctagatatttctagtttgtaatgtacagccttcct 21199347  T
Q  215 atagtagtataaataagg 232  Q
      |||| |||||||||||    
T  21199348 ggagtactataaataagg 21199365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 73080 - 73144
Alignment:
Q  11 aatatggaagtctctagaatggt---gaataatatggaagactctagaatactagggaataatat 72  Q
    |||||||||||||||||||||||   |||||||||||||| |||||||| ||||  |||||||||    
T  73080 aatatggaagtctctagaatggtgaagaataatatggaagtctctagaagactaaagaataatat 73144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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