View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14738_high_28 (Length: 223)
Name: NF14738_high_28
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14738_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 48273984 - 48273797
Alignment:
| Q |
19 |
atccaaaataagtttgaattgctttgatataaacattaaccaacgcagctggttttcaaattatagaaactgaatggtttagctggggtttctacctcct |
118 |
Q |
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| T |
48273984 |
atccaaaataagtttgaattgctttgatataaacattaaccaatgcagctggttttcaaattatagaaactgaatggtttagctggggtttctacctcct |
48273885 |
T |
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| Q |
119 |
atgtcttacagtcaatctcaattggaccacaaacacttcttacttatgacaagtaatgaaaagtttgcaagtttataacaactaaaac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
48273884 |
atgtcttacagtcaatctcaattggaccacaaacacttcttacttaagacaagtaatgaaaagtttgcaagtttataacaactaaaac |
48273797 |
T |
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