View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14738_high_4 (Length: 425)
Name: NF14738_high_4
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14738_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 47425976 - 47425813
Alignment:
| Q |
17 |
ataaataacaattgttttatcattttctctaggtttttagatgaactaaatctaaatccttgtcacgaacaactaattcatgtggtcgataagctattga |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || ||||| |
|
|
| T |
47425976 |
ataaataacaattattttatcattttctctaggtttttagatgaactaaatctaaatccttgtcatgaacaactaattcatgtggtcaatccgcaattga |
47425877 |
T |
|
| Q |
117 |
tctagtcattctccatgaatatgacgatctttctttccacttctcatctcattcaaccttgtat |
180 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47425876 |
tctagtcattcttcatgaatatgacgatctttctttccacttctcatctcattcaaccttgtat |
47425813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 262 - 407
Target Start/End: Complemental strand, 47425731 - 47425586
Alignment:
| Q |
262 |
ttacactaaagtgaaagcttcttgtataacgaatccttaatcgcattagttactcacatatccaagacacttgattagtagtatggtgtccaaactcact |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47425731 |
ttacactaaagtgaaagcttcttgtataacaaatccttaatcgcattagttactcacatatccaagacacttgattagtagtatggtgtccaaactcact |
47425632 |
T |
|
| Q |
362 |
tgtgtggttgttcaacgcttaatatggatggttatttgggctcccc |
407 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
47425631 |
tgtgtggttgttcaacactcaatatggatggttatttgggctcccc |
47425586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University