View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14738_high_5 (Length: 415)
Name: NF14738_high_5
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14738_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 44649868 - 44650141
Alignment:
| Q |
16 |
atgaaccgtaaacaagtttttgtcttattaatttgcttgttttggtttggagttaggttctattgactatcctcttgcataagctacatggggtttgtaa |
115 |
Q |
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| T |
44649868 |
atgaaccgtaaacaagtttttgtcttattaatttgcttgttttggtttggtgttaggttctattgactatcctcttgcataagctacatggggtttgtaa |
44649967 |
T |
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| Q |
116 |
attaaggatttctttatcaaaaagtttgctacatattcacatgannnnnnnnnagaggatacacacgatttgaatatgacaatttccatttaacggaaaa |
215 |
Q |
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| T |
44649968 |
attaaggatttctttatcaaaaagtttgctacatattcacatga-ttttttttagaggatacacacgatttgaatatgacaatttccatttaacggaaaa |
44650066 |
T |
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| Q |
216 |
ataataagaaatctaacaattaacaaagaccaggtgattgtttgatcctttaaaaaaatagcgattgattattgt |
290 |
Q |
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| T |
44650067 |
ataataagaaatctaacaattaacaaagaccaggtgattgtttgatcctttaaaaaaatagcgattgattattgt |
44650141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 304 - 397
Target Start/End: Original strand, 44650167 - 44650262
Alignment:
| Q |
304 |
cgattgtttgattaaaggtgggaactctcaaactttacaaagatgtttgatttctatcatttgtcatgcgaatatata--tgagtcttctagtata |
397 |
Q |
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| T |
44650167 |
cgattgtttgattaaaggtgggaactctcaaactttacaaagatgtttgatttctatcatttgtcatgcgaatatatatctgagtcttctagtata |
44650262 |
T |
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