View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14738_high_6 (Length: 372)
Name: NF14738_high_6
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14738_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 3 - 356
Target Start/End: Complemental strand, 29203344 - 29202990
Alignment:
| Q |
3 |
atcaatataaaagttcagagaggaatggacgattggaagcccccactcttgcattcattttttcaaaagtgaacactttttaaaaggtcatcaattaagg |
102 |
Q |
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| T |
29203344 |
atcaatataaaagttcagagaggaatggacgattggaagcccccactcttgcattcattttttcaaaagtgaacactttttaaaaggtcatcaattaagg |
29203245 |
T |
|
| Q |
103 |
agaaaaccatcttgaattttttnnnnnnnnnnngaccaatcacaaagaatgtgttcaagtgagtattcaaaagagtgtatcactagtatagtagcatgtc |
202 |
Q |
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| T |
29203244 |
agaaaaccatcttgaattttaaaaaaaaaaaaagaccaatcacaaagaatgtgttcaagtgagtattcaaaagagtgtatcactagtatagtagcatgtc |
29203145 |
T |
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| Q |
203 |
gcaaattcagaaaatgaatcagacaaaaatttcagagatgaatctcatggattataatatatacaagttaatgatatatgctttcatgcagtgtac-nnn |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29203144 |
gcaaattcagaaaatgaatcagacaaaaatttcagagatgaatctcatggattataatatatacaagttaatgatatatgctttcatgcagtgtactttt |
29203045 |
T |
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| Q |
302 |
nnnngtgcgtgttatgatttaatatgaagaataaccatatggaagtgtatacctg |
356 |
Q |
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| T |
29203044 |
ttttgtgcgtgttatgatttaatatgaagaataaccatatggaagtgtatacctg |
29202990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 3 - 356
Target Start/End: Original strand, 12648532 - 12648897
Alignment:
| Q |
3 |
atcaatataaaagttcagagaggaatggacgattggaagccccca-------------ctcttgcattcattttttcaaaagtgaacactttttaaaagg |
89 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12648532 |
atcaatataaaagttcagagaggaatggacgaatggaagcccccattctttgtacccactcttgcattcattttttcaaaagtgaacactttttaaaagg |
12648631 |
T |
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| Q |
90 |
tcatcaattaaggagaaaaccatcttgaattttttnnnnnnnnnnngaccaatcacaaagaatgtgttcaagtgagtattcaaaagagtgtatcactagt |
189 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12648632 |
tcatcaattaaggagaaaaccatcttgaattttttttaaaaaaaa-gaccaatcacaaacaatgtgttcaagtgagtattcaaaagagtgtatcactagt |
12648730 |
T |
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| Q |
190 |
atagtagcatgtcgcaaattcagaaaatgaatcagacaaaaatttcagagatgaatctcatggattataatatatacaagttaatgatatatgctttcat |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12648731 |
atagtagcatgtcgcaaattcagaaaatgaatcagacaaaaatttcagagatgaatctcatggattataatatatataagttaatgatatatgctttcat |
12648830 |
T |
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| Q |
290 |
gcagtgtacnnnnnnngtgcgtgttatgatttaatatgaagaataaccatatggaagtgtatacctg |
356 |
Q |
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| T |
12648831 |
gtagtgtactttttttgtgcatgtaatgatttaatatgaagaataaccatatggaagtgtatacctg |
12648897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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