View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14738_high_7 (Length: 370)
Name: NF14738_high_7
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14738_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 341
Target Start/End: Complemental strand, 24377827 - 24377503
Alignment:
| Q |
11 |
agaagcataggtagctattgcacaagaaagcaatgcaagtggccctccaatccatcctagttgagcagtactccatgccaatgacaaaacaccagaccca |
110 |
Q |
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| T |
24377827 |
agaaacataggtagctattgcacaagaaagtaatgcaagtggccctccaatccatcctagttgagcagtactccatgccaatgacaaaacaccagacccg |
24377728 |
T |
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| Q |
111 |
ataacaccagtgatgatatgagccaaggcactctttaaatttcctgcagaatttgtagcagaataaaaccttagtattcaaattgatgcatatgaaaatg |
210 |
Q |
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| T |
24377727 |
ataacaccagtgatgatatgagccaaggcactctttaaatttcctgcagaatttgtagcaggataaaagcttagtattcaaatgcatgcatatgaaaa-- |
24377630 |
T |
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| Q |
211 |
aaaatgaattggttatgaagcaatttagaattttaccagtccttttggcatgtccatcatcatcataagcaacagaagcagttgttatttgaagagagtt |
310 |
Q |
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| T |
24377629 |
----tgaattggttatgaagcaatttagaattttaccagtccttttggcatgtccatcatcatcataagcaacagaagcagtcgttatttgtagagaatt |
24377534 |
T |
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| Q |
311 |
ttgcttattcatctttatccaagcatatata |
341 |
Q |
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| T |
24377533 |
ttgcttattcatctttatccaagcatatata |
24377503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 24400664 - 24400410
Alignment:
| Q |
17 |
ataggtagctattgcacaagaaagcaatgcaagtggccctccaatccatcctagttgagcagtactccatgccaatgacaaaacaccagacccaataaca |
116 |
Q |
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| T |
24400664 |
ataggtagctattgcacaagaaaacaaggcaagtggccctccaatccatcctaattgagaaatactccatgccaaagacaaaacaccagaaccaataaca |
24400565 |
T |
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| Q |
117 |
ccagtgatgatatgagccaaggcactctttaaatttcctgcagaatttgtagcagaataaaaccttagtattcaaattgatgcatatgaaaatgaaaatg |
216 |
Q |
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| T |
24400564 |
gctgtgatgatatgagccacagcactttttacatttcctgcagaatttat-cccgaataaaacttcagtattcaaattcaagtat------atgaaaatc |
24400472 |
T |
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| Q |
217 |
aattggttatgaagcaatttagaattttaccagtccttttggcatgtccatcatcatcataa |
278 |
Q |
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| T |
24400471 |
aattggttatgatgctatagagaattttacctgtccttttggcacgtccgtcatcatcataa |
24400410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 24413105 - 24412972
Alignment:
| Q |
25 |
ctattgcacaagaaagcaatgcaagtggccctccaatccatcctagttgagcagtactccatgccaatgacaaaacaccagacccaataacaccagtgat |
124 |
Q |
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| T |
24413105 |
ctattgcacaacaaagcaaggtaactggtcctccaatccatcctaattgagcagtactccatgccaatgacagaacaccagaaccaataactgctgtgat |
24413006 |
T |
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| Q |
125 |
gatatgagccaaggcactctttaaatttcctgca |
158 |
Q |
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| T |
24413005 |
gatatgagccacagcactctttaaatttcctgca |
24412972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 24420936 - 24421069
Alignment:
| Q |
25 |
ctattgcacaagaaagcaatgcaagtggccctccaatccatcctagttgagcagtactccatgccaatgacaaaacaccagacccaataacaccagtgat |
124 |
Q |
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| T |
24420936 |
ctattgcacaacaaagcaaggtaactggtcctccaatccatcctaattgagcagtactccatgccaatgacagaacaccagaaccaataactgctgtgat |
24421035 |
T |
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| Q |
125 |
gatatgagccaaggcactctttaaatttcctgca |
158 |
Q |
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| T |
24421036 |
gatatgagccacagcactctttaaatttcctgca |
24421069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 333
Target Start/End: Complemental strand, 24412885 - 24412796
Alignment:
| Q |
244 |
taccagtccttttggcatgtccatcatcatcataagcaacagaagcagttgttatttgaagagagttttgcttattcatctttatccaag |
333 |
Q |
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| T |
24412885 |
taccagtcctttttgcatgtccatcatcatcataagcaccagaagcttttgttatttgaagagagtttttcccatccatttttatccaag |
24412796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 24421156 - 24421245
Alignment:
| Q |
244 |
taccagtccttttggcatgtccatcatcatcataagcaacagaagcagttgttatttgaagagagttttgcttattcatctttatccaag |
333 |
Q |
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| T |
24421156 |
taccagtcctttttgcatgtccatcatcatcataagcaccagaagcttttgttatttgaagagagtttttcccatccatttttatccaag |
24421245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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