View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14738_high_8 (Length: 369)
Name: NF14738_high_8
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14738_high_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 369
Target Start/End: Original strand, 47893538 - 47893892
Alignment:
| Q |
15 |
tagctagctacacgagtcacactgcaatcaattactcctctcactcactcatacaccattccttaatccatccgaaaccatgatcaaaattccaaacctt |
114 |
Q |
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| T |
47893538 |
tagctagctacacgagtcacactgcaatcaattactcctctcagtcactcatacaccattccttaatccatccgaaaccatgatcaaaattccaaacctt |
47893637 |
T |
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| Q |
115 |
aaaatccctgagtggaacacaacacattacgaggaagtaccattctccaaccatttcatttcaaacgacatagacatagccacttcatgcatgactgaag |
214 |
Q |
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| T |
47893638 |
aaaatccctgagtggaacacaacacaatacgaggaagtaacattctccaaccatttcatttcaaacgacatagacatacacacttcatgcatgactgaag |
47893737 |
T |
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| Q |
215 |
atttcgacttaccaatccatgttttatcaactgaccaattcagaatggtcgaattcaaggtaagaaaatgcaaacgtggtcggtcccatgactggacgga |
314 |
Q |
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| T |
47893738 |
atttcgacttaccaatccatgttttctcaactgaccaattccgaatgttcgaattcaaggttcgaaaatgccaacgtggtaggtcccatgactggacgga |
47893837 |
T |
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| Q |
315 |
ctgtcaatactcccatcccggcgagaaagcttgccggagagaccctcaaaaatac |
369 |
Q |
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| T |
47893838 |
ctgtccatactctcatcccggtgaaaaagctcgccggagagaccctcaaaaatac |
47893892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 344
Target Start/End: Original strand, 34340179 - 34340255
Alignment:
| Q |
268 |
ttcaaggtaagaaaatgcaaacgtggtcggtcccatgactggacggactgtcaatactcccatcccggcgagaaagc |
344 |
Q |
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| T |
34340179 |
ttcaagataagaagatgcgcacgtggaagatcacatgactggacggagtgtccatacgcacatcccggcgagaaagc |
34340255 |
T |
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