View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14738_high_9 (Length: 368)
Name: NF14738_high_9
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14738_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 6182291 - 6181940
Alignment:
| Q |
1 |
tcatattcagatttcaagatgtgtttgaaatcgtgaatgtgaatgatttcaagatgtgttctagatttgccagataatgctggtgatgcacaaagatctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6182291 |
tcatattcagatttcaagatgtgtttgaaatcgtgaatgtgaatgatttcaagatgtgttctagatttgccagataatgctggtgatgcacaaagatctg |
6182192 |
T |
|
| Q |
101 |
ccaattgagagcaaaagaagacggatggaaaaggcttgttcctaattaattcaagtgttgatcccaatatctttgaaaagatagtttatcaagaaaccac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6182191 |
ccaattgagagcaaaagaagacggatggaaaaggcttgttcctaattcattcaagtgttgatcccaatatctttgaaaagatagtttatcaagaaaccac |
6182092 |
T |
|
| Q |
201 |
aaaaggtgtttgggatactcttaataaagcataaggtggtcatgacaagttaaagaaggtgaagcttcaagcactgcaatgccaatatgagctgatcaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6182091 |
aaaaggtgtttgggatactcttaataaagcataaggtggtcatgacaagtcaaagaaggtgaagcttcaagcactgcaaagccaatatgagctgatcaag |
6181992 |
T |
|
| Q |
301 |
aaactagttcagaattcttttcaaaagcaatgactttaacaaagatcagaat |
352 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
6181991 |
aaactagttcagaattattttcaaaagcaatgactttaacaaatatcagaat |
6181940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 6222466 - 6222115
Alignment:
| Q |
1 |
tcatattcagatttcaagatgtgtttgaaatcgtgaatgtgaatgatttcaagatgtgttctagatttgccagataatgctggtgatgcacaaagatctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6222466 |
tcatattcagatttcaagatgtgtttgaaatcgtgaatgtgaatgatttcaagatgtgttctagatttgccagataatgctggtgatgcacaaagatctg |
6222367 |
T |
|
| Q |
101 |
ccaattgagagcaaaagaagacggatggaaaaggcttgttcctaattaattcaagtgttgatcccaatatctttgaaaagatagtttatcaagaaaccac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6222366 |
ccaattgagagcaaaagaagacggatggaaaaggcttgttcctaattcattcaagtgttgatcccaatatctttgaaaagatagtttatcaagaaaccac |
6222267 |
T |
|
| Q |
201 |
aaaaggtgtttgggatactcttaataaagcataaggtggtcatgacaagttaaagaaggtgaagcttcaagcactgcaatgccaatatgagctgatcaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6222266 |
aaaaggtgtttgggatactcttaataaagcataaggtggtcatgacaagtcaaagaaggtgaagcttcaagcactgcaaagccaatatgagctgatcaag |
6222167 |
T |
|
| Q |
301 |
aaactagttcagaattcttttcaaaagcaatgactttaacaaagatcagaat |
352 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
6222166 |
aaactagttcagaattattttcaaaagcaatgactttaacaaatatcagaat |
6222115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 44756052 - 44756088
Alignment:
| Q |
3 |
atattcagatttcaagatgtgtttgaaatcgtgaatg |
39 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
44756052 |
atattcatattccaagatgtgtttgaaatcgtgaatg |
44756088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University